Table 5.
Predicted transcription factor binding sites in the Eδ3′ and Eζ3′-2 enhancers
| Factor [Accession#]a | 5′ start in the Eδ3′ Enhancer | Observed motifb |
|---|---|---|
| Oct-2 [T00646] | 94 | ATTTTCAT |
| E47 [T00207] | 133 | ACAGCTGa |
| E47 [T00207] | 267 | ACAGCTGG |
| muEBP-C2 [T00215] | 356 | CACATG |
| E47 [T00207] | 1260 | CCAGCTGGc |
| muEBP-C2 [T00215] | 1514 | CACATG |
| E12 [T00204] | 2097 | GCAGATG |
| TFE3 [T00810] | 2258 | GAAGTCATGTGGGC |
| Oct-2 [T00646] | 3020 | ATGGAAATc |
| muEBP-C2 [T00215] | 3045 | CATGTG |
| E12 [T00204] | 3217 | AGCTGCAGGTGAC |
| muEBP-C2 [T00215] | 3299 | CACATG |
| Oct-2 [T00646] | 3327 | ATGTAAAT |
| muEBP-C2 [T00215] | 3339 | CATGTG |
| Oct-2 [T00646] | 3341 | ATgTGCAT |
| 5′ start in the Eζ3′-2 Enhancer | ||
| E47 [T05421] | 26 | GCAGGTGTGC |
| PU.1 [T02068] | 126 | AgGGTTCCTC |
| Oct-2 [T00648] | 275 | ATGCAAATCCT |
| c-Ets-1 [T00112] | 359 | TTTCCTG |
| c-Ets-1 [T00111] | 942 | tTCTTCCTGG |
| c-Ets-1 [T00111] | 947 | CCTGGAAGTG |
| c-Ets-1 [T00111] | 1205 | AGCTTCCGCC |
| c-Ets-1 [T00112] | 1385 | CAGGAAT |
a
Accession numbers in Transfac database
b
small letters are non-canonical nucleotides in the enhancer sequence
c
bold letters are motifs whose core has been shown to be functional in fish