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. Author manuscript; available in PMC: 2011 Feb 1.
Published in final edited form as: Bioorg Med Chem. 2008 Oct 17;17(19):7064–7072. doi: 10.1016/j.bmc.2008.10.031

Table 1.

Sodium channel binding activities for the training set used in the final non-cross-validated CoMFA modela

Compound R1 R2 R3 R4 n LogP 3H-BTX IC50 (μM) Final model, −pIC50b
Obsd Pred Res
1 n-Propyl H H 1.96 162 −2.21 −2.10 −0.11
2 n-Butyl H H 2.46 103 −2.01 −1.91 −0.10
3 n-Butyl H H 3.01 285 −2.45 −2.16 −0.30
4 n-Pentyl H Methyl 2.96 39 −1.59 −1.55 −0.04
5 n-Hexyl H H 3.40 13 −1.11 −1.17 0.06
6 n-Heptyl H H 3.96 5 −0.70 −0.82 0.12
7 n-Nonyl H H 4.96 5 −0.70 −0.54 −0.16
8 Methyl Ethyl H 2.02 720 −2.86 −2.87 0.01
9 1 0.96 2112 −3.32 −2.87 −0.46
10 2 1.46 851 −2.93 −2.66 −0.27
11 3 1.96 251 −2.40 −2.52 0.12
12 4 2.46 251 −2.40 −2.43 0.03
13 1.52 250 −2.40 −2.46 0.06
14 n-Butyl Methyl H H 2.96 225 −2.35 −2.03 −0.33
15 n-Butyl H Methyl H 2.96 58 −1.76 −1.78 0.02
16 n-Butyl H H Methyl 2.96 95 −1.98 −2.22 0.25
17 Cyclohexyl H H H 2.96 58 −1.76 −1.91 0.14
18 2 2.01 700 −2.85 −3.11 0.27
19 3 2.51 427 −2.63 −2.79 0.16
20 3.70 9 −0.95 −0.96 0.01
21 1.39 910 −2.96 −3.10 0.14
22 3.86 5.4 −0.73 −0.95 0.22
23 51 −1.71 −1.65 −0.06
24 1.82 49 −1.69 −1.71 0.02
25 3.77 1.4 −0.15 0.22 −0.37
26 3.87 3.5 −0.54 −0.99 0.44
27 3.34 7.1 −0.85 −0.81 −0.04
28 2.70 240 −2.38 −1.94 −0.44
29 2.74 24 −1.38 −1.12 −0.26
30 3.01 12.9 −1.11 −0.86 −0.25
31 2.18 53.7 −1.73 −1.81 0.08
32 2.53 109.6 −2.04 −1.96 −0.08
33 2.42 2 −0.28 −0.72 0.44
34 2.42 24 −1.38 −1.50 0.12
35 3.27 3.4 −0.53 −0.73 0.20
36 2.46 40 −1.60 −1.95 0.35
a

Number of components = 4; s = 0.245; q2 = 0.926.

b

−pIC50 = −log IC50.