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. 2010 Jun 11;86(6):918–928. doi: 10.1016/j.ajhg.2010.05.003

Table 2.

Haplotype Preference of CNVEs

CNVR Chr. First CNVE Second CNVE No. of Pairs Observeda Nullb Difference p Value
CNVR154 2 CNVE228 CNVE227 75 0.7455 0.6151 0.1304 0
CNVR1199 19 CNVE1685 CNVE1684 14 0.8342 0.6704 0.1637 0
CNVR1079 15 CNVE1509 CNVE1508 23 0.8737 0.7079 0.1658 0
CNVR315 4 CNVE432 CNVE431 40 0.8993 0.6347 0.2646 0
CNVR1251 21 CNVE1771 CNVE1770 52 0.9096 0.7458 0.1638 0
CNVR219 3 CNVE304 CNVE303 28 0.9165 0.7028 0.2137 0
CNVR55 1 CNVE103 CNVE102 17 0.9592 0.7225 0.2366 0
CNVR328 4 CNVE448 CNVE449 56 0.7155 0.6316 0.0839 0.0001
CNVR1128 16 CNVE1592 CNVE1591 8 0.8284 0.6387 0.1897 0.0003
CNVR774 10 CNVE1096 CNVE1095 54 0.8332 0.75 0.0833 0.0008
CNVR1251 21 CNVE1770 CNVE1771 52 0.9096 0.7242 0.1854 0.0008
CNVR1251 21 CNVE1772 CNVE1771 4 0.9351 0.7148 0.2203 0.0014
CNVR633 8 CNVE863 CNVE862 56 0.6975 0.6503 0.0472 0.002
CNVR328 4 CNVE449 CNVE448 56 0.7155 0.641 0.0745 0.0039
CNVR774 10 CNVE1095 CNVE1096 54 0.8332 0.747 0.0862 0.006
CNVR154 2 CNVE227 CNVE228 75 0.7455 0.6234 0.1222 0.0111
CNVR592 7 CNVE796 CNVE795 18 0.7494 0.6779 0.0715 0.0115
CNVR1125 16 CNVE1588 CNVE1587 13 0.6877 0.6396 0.0481 0.0157
CNVR633 8 CNVE862 CNVE863 56 0.6975 0.6376 0.06 0.016
CNVR152 2 CNVE225 CNVE224 81 0.6713 0.6324 0.0389 0.0169
CNVR1251 21 CNVE1771 CNVE1772 4 0.9351 0.7464 0.1886 0.0496
CNVR1202 19 CNVE1690 CNVE1689 11 0.777 0.7462 0.0308 0.084
CNVR592 7 CNVE795 CNVE796 18 0.7494 0.6867 0.0628 0.1904
CNVR152 2 CNVE224 CNVE225 81 0.6713 0.6495 0.0219 0.2153
CNVR273 4 CNVE375 CNVE374 18 0.4741 0.5812 −0.1071 0.9962
CNVR649 8 CNVE912 CNVE911 25 0.5285 0.6107 −0.0823 0.9997
a

Observed similarity of haplotype backgrounds between CNVEs in the same CNVR, which was measured by the averaged homozygosity of every between-event haplotype pair.

b

Expected similarity was obtained by bootstrapping to generate null distributions of averaged homozygosity and under the assumption that one of the CNVEs could arise randomly from any of the observed haplotypes. See the text for details regarding the analysis. p values in italics were significant after Bonferroni correction. Additional information on each of the CNVRs and CNVEs is given in Tables S10 and S12.