Table 2.
Oligonucleotide sequences for EMSA
Name of Oligos | Sequence |
---|---|
HTR5A_A_F | CAGAAACTCCCCCACTGGCCAGAGGTTGCAAACATCCGGAT |
HTR5A_A_R | ATCCGGATGTTTGCAACCTCTGGCCAGTGGGGGAGTTTCTG |
HTR5A_G_F | CAGAAACTCCCCCACTGGCCGGAGGTTGCAAACATCCGGAT |
HTR5A_G_R | ATCCGGATGTTTGCAACCTCCGGCCAGTGGGGGAGTTTCTG |
Electrophoretic mobility shift assay (EMSA) probes are all 41-mer with the 21st nucleotide carrying the alternative allele (A or G on the forward strand, bold) of rs3734967, the TG-associated promoter single nucleotide polymorphism (SNP) of HTR5A.