Table 4.
SNP | −10 bases | Allele 1 | Allele 2 | +10 Bases | MAF |
---|---|---|---|---|---|
rs6972688 | TCACATACAT | A | G | TAGTTGGAGT | 0.34 |
rs7805887 | CTTTGGAAAG | A | G | GATCTGAGTT | 0.34 |
rs1583830 | CCTGTTCAGC | T | C | CTTGATTTGG | 0.394 |
rs4960675 | GAATGTACCC | G | A | TGTAACCAGC | 0.328 |
rs4960575 | TGGACACACC | A | C | GTCTCAGAAA | 0.386 |
rs1440461 | ATGTAGCCCC | A | G | ATTCCAGGAC | 0.384 |
rs1440458 | AAGAAAAGAA | T | C | GCCGGTCCTT | 0.052 |
rs1440454 | CTGCCTGCAG | A | G | GTCTCAGCCA | 0.386 |
rs2873379* | ATATGGCAGA | T | C | GGGAGTTTTA | 0.269 |
rs1017488* | CAGCTTCATC | T | G | TAAAGCATAG | 0.266 |
rs2698501* | ACTTTTTCCA | A | G | AGAAGAGGAT | 0.274 |
−1910G_A* | AAAGAAGAGG | A | G | TTCATAGTTT | 0.048 |
−1457T_C* | TTTTATATTG | C | T | TATATCATGT | 0.003 |
rs1881691* | CTGCCTTATG | A | C | CTCTGAGGAG | 0.352 |
−1015A_G* | GGAGAACAAA | A | G | GTTAGTGAAA | 0.002 |
rs3823534* | GGGCAGGGAG | A | G | CAACGCGGTG | 0.257 |
rs3734966* | AGCCACACCA | T | C | CTCCAACGGA | 0.072 |
rs3734967* | CCCACTGGCC | A | G | GAGGTTGCAA | 0.327 |
rs1800883* | GTACCCCAGG | G | C | CGGTCTCCTG | 0.357 |
HTR5A starts | |||||
rs6320* | TGGATTTACC | T | A | GTGAACCTAA | 0.285 |
42T_C* | CCTCTCCACC | C | T | CCTCCCCTTT | 0.055 |
rs2241859* | TTACTCCCCC | C | A | ACTCCCAAAC | 0.323 |
862G_A* | GGAGTGGGGG | G | A | AGTAAACTGG | 0.024 |
rs2581841* | GCATTTCATC | T | C | TAGTCTATTC | 0.32 |
rs4581000 | TACTTTGAAT | A | C | TTTATTCAAC | 0.006 |
rs6597455 | AATTGCAAGA | C | G | TTAGGATCAT | 0.344 |
rs732050 | TTCTAATCCA | T | C | GATTGCAATA | 0.314 |
rs2698512 | ACAGAAAGTG | G | A | GATTTTCAAT | 0.04 |
rs1657268 | AAAGTTTGGA | T | C | TATTATGGAC | 0.388 |
rs6947679 | AGGTTATAAA | G | A | ATGGTAGAAA | 0.097 |
rs1730208 | GTGGATGTGC | G | A | GAATCCAGGC | 0.312 |
rs893112 | AACAAGCAAT | T | C | CCCGGTGGAT | 0.311 |
rs1657278 | GCTTAAACAA | A | C | TAGAGAGATT | 0.369 |
rs1730135 | TCAGAAAACA | C | T | CTTCACAGAC | 0.364 |
rs1436818 | ATATTTTCCA | G | A | TTAAACATCA | 0.362 |
rs1730182 | AGAAAGCCAC | G | C | TCTGTATCCT | 0.37 |
rs893109 | CTTAAAAAGT | G | A | GGGAAAATAT | 0.295 |
rs1730143 | GGGACCCGCC | G | T | CCCCTTGGCT | 0.348 |
rs1657265 | AGACATGAGA | C | T | GTGTAGCAGA | 0.238 |
rs893108 | GCAGGGCAGC | C | T | TGGACGTGCT | 0.193 |
MAF, minor allele frequency.