Table 2.
Paternally expressed imprinted genes
| Number | Annotation | CxL M/P | LxC M/P | met1 M/P | fie M/P | dme M/P | Endo exp* | Emb exp* | met1 exp | fie exp | dme exp |
| AT1G17770 #/F/D/M | SUVH7 | 3/5 | 5/13 | 0/0 | 368/213 | 295/254 | 3/6 | 0/0 | 0 | 159 | 121 |
| AT1G31640 F/M | AGL92 | 1/6 | 1/14 | 0/0 | 150/131 | 8/49 | 2/16 | 1/0 | 0 | 115 | 14 |
| AT1G48910 F/D/M | YUC10 | 36/70 | 30/279 | 6/5 | 124/131 | 703/372 | 78/2 | 0/0 | 15 | 194 | 651 |
| AT1G57800 F/D | VIM5 | 249/2,818 | 343/3,513 | 10/246 | 3,734/3,966 | 1,066/694 | 458/208 | 22/2 | 157 | 1,965 | 324 |
| AT1G60410 F/M | F-box | 4/33 | 6/32 | 0/0 | 552/301 | 17/160 | 8/10 | 3/0 | 0 | 351 | 56 |
| AT2G21930 F/M | F-box | 2/15 | 0/18 | 0/0 | 16/24 | 0/7 | 17/4 | 1/3 | 0 | 109 | 17 |
| AT2G36560 F/D/M | 0/55 | 3/42 | 0/0 | 826/227 | 84/334 | 8/17 | 1/0 | 0 | 263 | 78 | |
| AT4G11940 F/D | 1/6 | 1/15 | 0/0 | 124/141 | 67/36 | 3/9 | 0/0 | 1 | 183 | 54 | |
| AT5G63740 F/D | 16/34 | 16/59 | 0/0 | 11,420/12,497 | 1,110/1,391 | 24/9 | 7/0 | 0 | 15,141 | 1,159 |
A list of previously undescribed paternally expressed imprinted genes at a P < 0.001 (except #). Total maternal (M) and paternal (P) reads are shown for the indicated genotypes as well as transcriptional scores (number of reads per kilobase of sequence per 10 million aligned reads) for endosperm (Endo exp), embryo (Emb exp), and the indicated mutant genotypes. #, identified by Sanger sequencing; F, biallelic in fie endosperm; D, biallelic in dme endosperm; M, paternal allele down-regulated in met1 endosperm.
*Transcriptional scores derived from manually dissected and LCM tissue are shown before and after the slash, respectively.