Table 2. The observed overlap between the NHGRI SNPs and SNPs tagging CNVs (r2≥0.80).
| SNPs tagging CNVs | chromosome | position | NHGRI SNP | r2 between SNPs | CNV (maximal r2 with best tag SNP) | trait |
| rs11576866 | 1 | 10337019 | rs10492972 | 0.887 | CNVR65.1(0.98) | Multiple sclerosis |
| rs12191877 | 6 | 31360904 | rs10484554 | 1 | CNVR2841.6(0.90) | Psoriasis, AIDS progression |
| rs1450111 | 3 | 157567524 | rs3772255 | 0.948 | CNVR1591.1(1) | Aging traits |
| rs2001114 | 6 | 167406568 | rs2301436 | 0.814 | CNVR3164.1(1) | Crohn's Disease |
| rs2410618 | 8 | 19897780 | rs2083637 | 1 | CNVR3814.1(0.998) | Waist circumference and related phenotypes, HDL cholesterol |
| rs36149991 | 6 | 32630367 | rs3135388 | 1 | CNVR2845.46(0.94) | Multiple sclerosis |
| rs6693105 | 1 | 150857287 | rs4085613 | 1 | CNVR358.1(0.956) | Psoriasis |
| rs7560547 | 2 | 203466161 | rs6725887 | 1 | CNVR1111.1(1) | Myocardial Infarction (early onset) |
| rs9635398 | 15 | 84147059 | rs7176093 | 0.846 | CNVR6495.1(1) | Aging traits |
| rs4882017 | 11 | 48526758 | rs7395662 | 1 | CNVR5165.1(1) | HDL cholesterol |
| rs4529687 | 1 | 87386671 | rs7553864 | 1 | CNVR240.1(0.99) | Smoking behavior |
| rs11249248 | 1 | 25625638 | rs10903129 | 0.967 | CNVR117.1(0.945) | Cholesterol, total |
| rs11209948 | 1 | 72584492 | rs2568958 | 1 | CNVR217.1(1) | Body mass index |
| rs9405040 | 6 | 32547371 | rs2395185 | 1 | CNVR2845.14(0.90) | Ulcerative colitis |
| rs1384601 | 12 | 33606133 | rs9300212 | 0.99 | CNVR5492.1(0.997) | Cognitive |