Table 3.
Differentially expressed UniGene transcripts in three different comparisons
| ID CITEST | GENE_INFO | accession number | Categories (MIPS) | Rub × Sun | Pool R × Sunk | Pool R × Pool S | |||
|---|---|---|---|---|---|---|---|---|---|
| Upregulated | Fold | P_Value | Fold | P_Value | Fold | P_Value | |||
| CAS-PT-300852 | Disease resistance protein RPS4 | BAB11393.1 | cell rescue, defense and virulence | 4,0 | 0,01 | 5,0 | 0,00 | 3,0 | 0,00 |
| CAS-CS-103511 | TIR-NBS-LRR resistance protein | XP_002325496.1 | cell rescue, defense and virulence | 4,0 | 0,02 | 4,2 | 0,02 | 4,0 | 0,01 |
| CAS-PT-303903 | Lea5 protein | Q39644.1 | cell rescue, defense and virulence | 30,9 | 0,00 | 22,0 | 0,00 | 4,1 | 0,01 |
| CAS-PT-301521 | FNR2 (ferredoxin-NADP(+) | NP_001077566.1 | cell type localisation | 13,5 | 0,02 | 13,2 | 0,03 | 3,3 | 0,02 |
| CAS-CS-115011 | Leucoanthocyanidin dioxygenase | XP_002528475.1 | metabolism | 5,3 | 0,03 | 6,4 | 0,04 | 3,2 | 0,01 |
| CAS-CS-103575 | Miraculin-like protein 2 | ACL78790.1 | protein activity regulation | 43,1 | 0,01 | 25,1 | 0,02 | 10,1 | 0,01 |
| CAS-CR-209520 | AL07-2p | ACJ03067.1 | protein fate (folding, mod., destination) | 87,5 | 0,00 | 106,4 | 0,02 | 3,7 | 0,00 |
| CAS-CS-119563 | Serine-threonine protein kinase | XP_002514954.1 | protein fate (folding, mod., destination) | 86,1 | 0,01 | 162,3 | 0,02 | 7,9 | 0,00 |
| CAS-CS-122102 | Serine-threonine protein kinase | XP_002512394.1 | protein fate (folding, mod., destination) | 25,5 | 0,01 | 50,8 | 0,04 | 4,6 | 0,02 |
| CAS-CS-128948 | Transducin family protein | ABS32230.1 | protein with binding function | 6,8 | 0,04 | 4,0 | 0,02 | 3,1 | 0,05 |
| CAS-CS-118778 | Synaptobrevin-related family | XP_002304221.1 | subcellular localisation | 5,6 | 0,02 | 5,6 | 0,04 | 4,4 | 0,05 |
| CAS-PT-303418 | Putative DNA binding protein | ABO93454.1 | subcellular localisation | 10,7 | 0,00 | 9,9 | 0,02 | 3,1 | 0,03 |
| CAS-PT-305376 | Gag-pol polyprotein | AAR13298.1 | transposable elements | 17,2 | 0,04 | 3,7 | 0,02 | 3,3 | 0,02 |
| CAS-PT-309741 | Hypothetical protein | XP_002609958.1 | unclassified proteins | 18,7 | 0,01 | 12,0 | 0,05 | 3,3 | 0,01 |
| CAS-PT-309581 | Hypothetical protein | XP_001018346.1 | unclassified proteins | 24,9 | 0,00 | 27,1 | 0,03 | 7,0 | 0,01 |
| CAS-CS-114114 | Hypothetical protein | XP_002280912.1 | unclassified proteins | 19,6 | 0,02 | 29,4 | 0,04 | 3,1 | 0,01 |
| CAS-PT-310125 | Hypothetical protein | XP_002275595.1 | unclassified proteins | 13,1 | 0,01 | 28,4 | 0,01 | 5,4 | 0,01 |
| CAS-CS-105219 | Hypothetical protein | XP_002590734.1 | unclassified proteins | 6,6 | 0,03 | 6,2 | 0,02 | 3,1 | 0,02 |
| CAS-PT-305253 | No significant similarity found | unclassified proteins | 25,5 | 0,01 | 6,2 | 0,05 | 3,2 | 0,01 | |
| CAS-CS-127334 | No significant similarity found | unclassified proteins | 10,2 | 0,00 | 6,2 | 0,04 | 3,6 | 0,00 | |
| CAS-PT-301031 | No significant similarity found | unclassified proteins | 70,6 | 0,01 | 37,6 | 0,01 | 3,4 | 0,01 | |
| Downregulated | |||||||||
| CAS-CS-101776 | superoxide dismutase | CAA03881.1 | function or cofactor requirement | 4,0 | 0,02 | 4,2 | 0,02 | 4,0 | 0,01 |
| CAS-CS-114557 | predicted protein | XP_002324594.1 | unclassified proteins | 30,9 | 0,00 | 22,0 | 0,00 | 4,1 | 0,01 |
| CAS-CR-203746 | predicted protein | XP_002331132.1 | unclassified proteins | 13,5 | 0,02 | 13,2 | 0,03 | 3,3 | 0,02 |
P. trifoliata Rubidoux versus C. sunki; resistant hybrids (Pool R) versus C. sunki; and resistant hybrids (Pool R) versus susceptible hybrids (Pool S), 48 hours after P. Parasitica inoculation.