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HLA calling accuracy and concordance with gold standard in 270 individuals
| Population | Concordant alleles | Original type missing | Original type incorrect | Incorrect call due to low coverage | Incorrect due to other reasons | Total | Accuracy |
|---|---|---|---|---|---|---|---|
| CEU | 457 | 66 | 6 | 10 | 1 | 540 (= 90 × 6) |
97.7% (463/474) |
| YRI | 485 | 8 | 16 | 29 | 2 | 540 (= 90 × 6) |
94.2% (501/532) |
| JPT | 246 | 6 | 9 | 5 | 4 | 270 (= 45 × 6) |
96.6% (255/264) |
| CHB | 258 | 0 | 7 | 5 | 0 | 270 (= 45 × 6) |
98.1% (265/270) |
| Total | 1446 | 80 | 38 | 49 | 7 | 1620 | 96.4% |
