TABLE 5.
DNA repeats
| Locationa | Repeat
|
Type | |
|---|---|---|---|
| Unit | No. | ||
| 3-84 | 82-mer | 1 | Inverted repeat of nt 442 to 523, Ka |
| 156-251 | 28-mer | 3 | Imperfect spaced direct repeats, Ka |
| 442-523 | 82-mer | 1 | Inverted repeat of nt 3 to 84, Ka |
| 529-655 | 40-mer | 3 | Imperfect spaced direct 36-, 38- & 40-mer repeat, Ka |
| 751-958 | 26-mer | 8 | Consecutive direct repeats, Ka |
| 2320-2676 | 21-mer | 17 | Consecutive direct repeats, Kab |
| 16218-16802 | 15-mer | 39 | Consecutive direct repeats, Kab |
| 32680-32881 | 10-mer | 21 | Imperfect consecutive direct repeats (8 to 11 mers), Kab |
| 50181-50268 | 11-mer | 8 | Consecutive direct repeats, Kab |
| 63110-63319 | 15-mer | 14 | Consecutive direct repeats, near OriL, Ka |
| 63388-63453 | 11-mer | 6 | Consecutive direct repeats, near OriL, Ka |
| 80326-80541 | 12-mer | 18 | Consecutive direct repeats, Kab |
| 95518-95616 | 11-mer | 9 | Consecutive direct repeats, Ka |
| 101141-117942 | IRS | 1 | Inverted repeat of TRS, 16.8 kb, separates UL and US regions, Ka |
| 101376-101501 | 22-mer | 5.5 | Consecutive direct repeats, Ka |
| 101650-101775 | 63-mer | 2 | Consecutive direct repeats, Ka |
| 108494-108683 | 19-mer | 10 | Consecutive direct repeats, Ka |
| 114359-115158 | 280-mer | 2.8 | Imperfect consecutive direct repeats forming the OriS, Ka |
| 117279-117687 | 35-mer | 11.5 | Consecutive direct repeats, Ka |
| 117752-117841 | 10-mer | 9 | Consecutive direct repeats, Ka |
| 120218-120378 | 50-mer | 2 | Spaced direct repeats, in US4 CDS, Rice |
| 126660-143461 | TRS | 1 | Inverted repeat of IRS, 16.8 kb, end of linear genome, Ka |
| 126761-126850 | 10-mer | 9 | Consecutive direct repeats, Kab |
| 126915-127323 | 35-mer | 11.5 | Consecutive direct repeats, Kab |
| 129444-130243 | 280-mer | 2.8 | Imperfect consecutive direct repeats forming the OriS, Ka |
| 135919-136108 | 19-mer | 10 | Consecutive direct repeats, Ka |
| 142827-142952 | 79-mer | 2 | Overlapping direct repeats, Ka |
| 143101-143312 | 22-mer | 5.5 | Overlapping direct repeats, Ka |
a
Numbering starts at +1 on the UL end of the genome.
b
Separates the poly(A) signals of two converging transcripts.