Table 1.
Five types of HTS datasets containing different kinds of systematic and/or random error generated and tested in this study
Error type | Generation of error-affected measurements |
---|---|
A. Datasets with both column and row systematic errors which are constant across all assay plates. | , 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250. |
B. Datasets with the column systematic error only which is constant across all plates. | , 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250. |
C. Datasets with the well systematic error which is constant across all plates. | , 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250. |
D. Datasets with the variable column and row systematic error which are different for each plate. | , 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250. |
E. Datasets with the random error only (i.e., systematic error was absent). | , 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250. |
where: is the error-affected value in well i,j (row i, column j) of plate p.
xijp is the original value in well i,j of plate p in the error-free dataset.
ri is the systematic error in row i (constant over all plates); it had a normal distribution with the parameters ~N(0, C).
xj is the systematic error in column j (constant over all plates); it had a normal distribution with the parameters ~N(0, C).
wij is the systematic error that affects well i,j (row i, column j) and is the same for all plates; it had a normal distribution with the parameters ~N(0, C).
rip is the systematic error in row i of plate p; it had a normal distribution with the parameters ~N(0, C).
cjp is the systematic error in column i of plate p; it had a normal distribution with the parameters ~N(0, C).
Randijp is the random error affecting well i,j (row i, column j) of plate p; it had a normal distribution with the parameters ~N(0, 0.3×SD).
Datasets for C = 0, 0.6×SD, 1.2×SD, 1.8×SD, 2.4×SD and 3×SD were generated and tested, where μ is the mean and SD is the standard deviation of the error-free dataset.