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. 2011 Jan 19;12:25. doi: 10.1186/1471-2105-12-25

Table 1.

Five types of HTS datasets containing different kinds of systematic and/or random error generated and tested in this study

Error type Generation of error-affected measurements
A. Datasets with both column and row systematic errors which are constant across all assay plates. xijp=xijp+ri+cj+Randijp, 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250.

B. Datasets with the column systematic error only which is constant across all plates. xijp=xijp+cj+Randijp, 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250.

C. Datasets with the well systematic error which is constant across all plates. xijp=xijp+wij+Randijp, 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250.

D. Datasets with the variable column and row systematic error which are different for each plate. xijp=xijp+rip+cjp+Randijp, 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250.

E. Datasets with the random error only (i.e., systematic error was absent). xijp=xijp+Randijp, 1 ≤ i ≤ 8, 1 ≤ j ≤ 12, 1 ≤ p ≤ 1250.

where: xijp is the error-affected value in well i,j (row i, column j) of plate p.

xijp is the original value in well i,j of plate p in the error-free dataset.

ri is the systematic error in row i (constant over all plates); it had a normal distribution with the parameters ~N(0, C).

xj is the systematic error in column j (constant over all plates); it had a normal distribution with the parameters ~N(0, C).

wij is the systematic error that affects well i,j (row i, column j) and is the same for all plates; it had a normal distribution with the parameters ~N(0, C).

rip is the systematic error in row i of plate p; it had a normal distribution with the parameters ~N(0, C).

cjp is the systematic error in column i of plate p; it had a normal distribution with the parameters ~N(0, C).

Randijp is the random error affecting well i,j (row i, column j) of plate p; it had a normal distribution with the parameters ~N(0, 0.3×SD).

Datasets for C = 0, 0.6×SD, 1.2×SD, 1.8×SD, 2.4×SD and 3×SD were generated and tested, where μ is the mean and SD is the standard deviation of the error-free dataset.