Table 2.
In silico predictions of the phenotypic features.
| Phenotype | (in vivo/in silico) | Related Enzymes | Related Reactions |
|---|---|---|---|
| Catalase activity | (+/+) | Catalase (1.11.1.6) | rxn87 |
| Citrate activity | (+/+) | citrate synthase (2.3.3.1) | rxn328 |
| Urease activity | (+/+) | Urease (3.5.1.5) | rxn610 |
| Nitrate reduction | (+/+) | Nitrate reductase (1.7.99.4) | rxn216-rxn218 |
| Substrate | (in vivo/in silico) | Transport Reactions | Utilization Reactions |
| Acetate | (+/+) | rxn964 | rxn527, rxn559, rxn817 |
| Adonitol | (-/-) | - | - |
| Glycine Betaine | (+/+) | rxn1112, rxn1113 | rxn136, rxn137, rxn243 |
| Butyrate | (-/-) | - | - |
| Caprylate | (-/-) | - | - |
| Cellobiose | (-/-) | - | - |
| Choline | (+/+) | rxn1004, rxn1005 | rxn83, rxn107, rxn580 |
| Citrate | (+/+) | rxn1007 | rxn328, rxn702, rxn726, rxn727 |
| Creatine | (-/-) | - | - |
| D-fructose | (+/+) | rxn1079, rxn1080 | rxn62, rxn337, rxn433, rxn781 |
| D-galactose | (+/+) | rxn1091 | rxn53 |
| D-glucose | (+/+) | rxn877, rxn881, rxn882 | rxn82, rxn422 |
| DL-glycerate | (+/+) | rxn1114 | rxn64 |
| DL-α-aminobutyrate | (-/-) | - | - |
| D-mannitol | (+/+) | rxn1173 | rxn33, rxn62 |
| D-mannose | (+/+) | rxn1161 | rxn33, rxn781 |
| D-melibiose | (-/-) | - | - |
| D-raffinose | (-/-) | - | - |
| D-ribose | (+/+) | rxn1274 | rxn418 |
| D-sorbitol | (+/+) | rxn1284 | rxn17 |
| L-tartrate | (+/+) | rxn1312 | rxn729 |
| D-trehalose | (+/+) | rxn1327, rxn1328 | rxn562 |
| Dulcitol (galactitol) | (+/+) | rxn1101 | rxn53 |
| D-xylose | (+/+) | rxn1385 | rxn22 |
| Erythritol | (+/+) | rxn1060 | rxn427 |
| Ethanol | (+/+) | rxn1065 | rxn2 |
| Fumarate | (+/+) | rxn1081 | rxn155, rxn156, rxn158 - rxn162, rxn720, rxn753 - rxn755 |
| Galactosamine | (-/-) | - | - |
| Gluconolactone | (-/-) | - | - |
| Glutamate | (+/+) | rxn1109 | rxn763, rxn854 |
| Glycerol | (+/+) | rxn1116 | rxn1, rxn429 |
| Glycine | (+/+) | rxn1118 | rxn182, rxn183, rxn257, rxn258, rxn605, rxn695, rxn802, rxn848, rxn859 |
| Inulin | (-/-) | - | - |
| Lactate | (-/-) | - | - |
| L-alanine | (-/-) | - | - |
| L-arabinose | (+/+) | rxn978 | rxn52 |
| L-arginine | (+/+) | rxn979 | rxn275, rxn616, rxn661, rxn753, rxn807 |
| L-asparagine | (+/+) | rxn981 | rxn597 |
| L-fucose | (-/-) | - | - |
| L-glutamine | (+/+) | rxn1103 | rxn175, rxn184, rxn389, rxn699, rxn806, rxn863, rxn868 - rxn872 |
| L-lysine | (+/+) | rxn1153 | rxn104, rxn814 |
| L-methionine | (-/-) | - | - |
| L-ornithine | (+/+) | rxn1209 | rxn267, rxn268, rxn750 |
| L-proline | (+/+) | rxn1248 | rxn195, rxn803 |
| L-rhamnose | (-/-) | - | - |
| L-serine | (+/+) | rxn1290 | rxn37, rxn256, rxn257, rxn297, rxn298, rxn514 - rxn520, rxn721, rxn722, rxn751, rxn799, rxn800 |
| L-threonine | (-/-) | - | - |
| L-valine | (-/-) | - | - |
| Malate | (+/+) | rxn1155 | rxn46, rxn47, rxn84, rxn85, rxn720 |
| Malonate | (+/+) | rxn1156 | rxn122 |
| Maltose | (+/+) | rxn1157 | rxn587 |
| Meso-inositol | (+/+) | rxn1170 | rxn96 |
| Oxalate | (-/-) | - | - |
| Propionate | (+/+) | rxn1249 | rxn433 |
| Putrescine | (-/-) | - | - |
| Sarcosine | (-/-) | - | - |
| Succinate | (+/+) | rxn1305 | rxn97, rxn98, rxn156, rxn159, rxn160, rxn163, rxn700, rxn841 |
| Sucrose | (+/+) | rxn883, rxn884, rxn885 | rxn337 |
| Tagatose | (+/+) | rxn1314 | rxn39, rxn439 |
| α-lactose | (-/-) | - | - |