Table 4.
Contig primers used for genomic amplifications.
| Primer | Sequence (5'-3') | TaoC | Product size (bp) | Primer | Sequence (5'-3') | TaoC | Product size (bp) |
| Contig 1F Contig 1R |
ACA gAT AgA AgC Agg ACg AA AAg ggT TgA Agg AAT TAT TgT C |
50 | 370 | Contig 58F Contig 58R |
ggg CAA gAA gAA ggA AgA gg TgA ggg TTA ggg AAg ggA gA |
50 | 267 |
| Contig 8F Contig 8R |
CCT CCA CTT CgC TgC TCC CT gCT CCT ggT TgC CgT TCT CC |
53 | 168 | Contig 63F Contig 63R |
CAg ggA ggT CgC AAg CAA TCA ACC CAA CgT ACg CAT |
48 | 898 |
| Contig 9F Contig 9R |
CAA ACT CgA TAg ggA Tgg C gCT TgA TTT gCA TAT Tgg gAC |
50 | 340 | Contig 65F Contig 65R |
gCT gCC TAT CTg CTT gCT T CCT TTC TCC Agg gAC CTT T |
48 | 295 |
| Contig 12F Contig 12R |
ACg CAC ATC ggA CAC gC CAg CTC CCg gTT CTT gg |
53 | 336 | Contig 66F Contig 66R |
gCg CAT CgT gAT ggA gCT Tgg gAg CCT TTg TTg TTg g |
53 | 302 |
| Contig 17F Contig 17R |
gCC ACC TTC TCA gCC ACA TTC gCC ggA ACA CCA AAC |
49 | 366 | Contig 73F Contig 73R |
CTg gTT TgC TAC TCC Tgg T Tgg CAT CCT TTg TTC TTT C |
46 | 417 |
| Contig 19F Contig 19R |
gCg gCA ACT ggA AAT g AgC CCT TgA gCg gAg T |
50 | 350 | Contig 75F Contig 75R |
gAg ATg gAC gAg ggA gTg AA ATg ggg TCT CCC TTg TTC TT |
50 | 499 |
| Contig 21F Contig 21R |
gCC CTC AAg ATT TCA AgC Ag ggg TTT TCg gAC AgT TTT gA |
50 | 516 | Contig 80F Contig 80R |
gCC AAg gAg TgA ggA Agg TCg ATT CAC ggA ggA gCA |
50 | 412 |
| Contig 22F Contig 22R |
ggA CAC CgA TgA gCA CCA AAg TTg ggA ggT TTC Agg |
48 | 363 | Contig 90F Contig 90R |
gAT TCg CAT CgC AgC ACA gCg gTT AAA CAg ACC CAg T |
50 | 409 |
| Contig 24F Contig 24R |
ggT Tgg CTT CTC CTC CCC T CgA gCT TCC TTg CCg TTC A |
51 | 331 | Contig 91F Contig 91R |
TTT Tgg TCC TTC ggT TTC g TCC TCC Tgg TgC ggT gA |
55 | 248 |
| Contig 30F Contig 30R |
gTT gAT gAg gAC CTT gTT TC TTg TTC ggg ggT TTT ATT TT |
44 | 450 | Contig 93F Contig 93R |
TTC AgC gAg CAC ggC AAA g gAC ACA Agg ATg gAT ggg A |
49 | 307 |
| Contig 33F Contig 33R |
ATg TCC CTC TCC TCg ACC TT AgT ggA TCA CCT CgA gCT TC |
51 | 291 | Contig 96F Contig 96R |
CTg CTg CTg CAA CAA gAT g gTT CCA ATg CCA CCA ATC T |
48 | 302 |
| Contig 34F Contig 34R |
ACT TCC gCA gCC TgT ACC TT CCA ACA ATT AgC CCA CTC AC |
53 | 302 | Contig 99F Contig 99R |
gCA TCT CCC CTC gAT TCC TA CgA CCC CgC TCT TCT CCT TC |
51 | 250 |
| Contig 35F Contig 35R |
CAA Tgg CgT CCA CCT CCT gC AgT CCg gTg ATg gTC TTC TTg g |
53 | 444 | Contig 105F Contig 105R |
CCg ATA ATA CAA TAC CAT TAC TCC TTT TTT gAC CTC |
40 | 434 |
| Contig 39F Contig 39R |
ggT gTT CTA CCg CTC CAA gAC gCC CAT TAC CCT TTT |
48 | 354 | Contig 110F Contig 110R |
CAT CTC gCT CCC CAC CTT TTT gCC CTT TgT TTg TTT |
40 | 356 |
| Contig 40F Contig 40R |
ACC CAC TAT ACC CAg gAg gC TCA gAA Cgg gAA gAA gCA gA |
51 | 338 | Contig 113F Contig 113R |
CAA AAA TAg CgT gCA Agg Tg TTg TTT CCA gTT Tgg TTg gA |
50 | 304 |
| Contig 46F Contig 46R |
gCA Agg Cgg TgA AgA ACg CCC TTT ggA CAg gAA CCC |
49 | 506 | Contig 122F Contig 122R |
AgC AAg gTT ggC TTC gTC CCg AgA ATT AAC AgC Agg AC |
50 | 474 |
| Contig 49F Contig 49R |
CTC gTg CCg AAg ACA gAA A CCC TCC CTT Tgg TTg gTT |
48 | 578 | Contig 133F Contig 133R |
CgT TAg CAg gAg CgA gTg gAg CAA ATC CAg CgA CCT |
49 | 196 |
| Contig 52F Contig 52R |
TTg ggT TCA CAg ATT Tgg Agg gAA gCA ATT AAC Agg gAC ACg |
50 | 432 | Contig 135F Contig 135R |
gCC gCA CAA gTT CTA CCA Cg ggA TTg ggA gTg ACg gTT CT |
51 | 311 |
| Contig 55F Contig 55R |
gAg TAC CgC TgC TTC gTC CCA CCT CCg CCA CTg AA |
53 | 286 | Contig 136F Contig 136R |
CAC CCA CTC CCA AAC CCT C gAT TTC AAg CAA gAA CCA A |
44 | 337 |
| Contig 57F Contig 57R |
CAC ggT TTC CAg CAA gCA TTg gCg TTC Agg gTC CTC |
50 | 227 |