Table 2.
Examples of known transcripts excluding ribosomal proteins found in the forward ovarian SSH library (cDNAs from stage III ovaries as the tester and those from stage I ovaries as the driver) of P. monodon.
| Transcript* | Species | Accession number | E-value | Size (bp) |
| Peritrophin 2 | Penaeus monodon | AAM44050.1 | 5 x 10-86 | 454 |
| Peritrophin 1 | Penaeus monodon | AAM44049.1 | 4 x 10-41 | 381 |
| Thrombospondin | Penaeus monodon | AAN17670 | 1 x 10-107 | 563 |
| Thrombospondin | Marsupenaeus japonicus | BAC92764.1 | 3 x 10-44 | 502 |
| Keratinocyte-associated protein 2 | Rattus norvegicus | NP_001099914.1 | 8 x 10-25 | 470 |
| Eukaryotic translation initiation factor 2, subunit 2 beta | Rattus norvegicus | AAH62402.1 | 7 x 10-11 | 605 |
| Ser/Thr Checkpoint kinase 1 (Chk1), CG17161-PA | Drosophila melanogaster | AAF53552 | 2 x 10-22 | 417 |
| Methionyl-tRNA formyltransferase, mitochondrial precursor (MtFMT) | Homo sapiens | NP_640335 | 4 x 10-7 | 483 |
| Nucleolin | Xenopus laevis | NP_001081557.1 | 8 x 10-4 | 380 |
| Eukaryotic initiation factor eIF-4A | Marsupenaeus japonicus | BAB78485 | 1 x 10-41 | 279 |
| 26S proteasome regulatory subunit rpn2 | Culex quinquefasciatus | XP_001862500 | 3 x 10-52 | 468 |
| Cytochrome c oxidase polypeptide IV | Bombyx mori | NP_001073120.1 | 3 x 10-38 | 405 |
| Hypothetical protein DKFZp434J1672.1 | Homo sapiens | CAB63724 | 6 x 10-24 | 525 |
| Coatomer protein complex, subunit beta | Gallus gallus | NP_001006467.1 | 1 x 10-67 | 588 |
| Chaperonin containing T-complex polypeptide 1 | Carassius auratus | BAA89277 | 8 x 10-44 | 627 |
| ATP synthase oligomycin sensitivity conferral protein | Toxoptera citricida | AAU84928 | 3 x 10-9 | 538 |
| Cyclin A | Asterina pectinifera | BAA14010 | 4 x 10-42 | 368 |
| Non-muscle myosin-II heavy chain | Apis mellifera | XP_393334 | 8 x 10-99 | 712 |
| Procollagen-proline, 2-oxoglutarate 4-dioxygenase (protein disulfide isomerase-associated 1) | Xenopus tropicalis | CAJ83276 | 2 x 10-47 | 663 |
| Chaperonin containing TCP1, subunit 7 | Danio rerio | NP_775355.1 | 4 x 10-24 | 249 |
| Isocitrate dehydrogenase 2 | Tribolium castaneum | EFA04299 | 1 x 10-37 | 231 |
| CD53 antigen | Homo sapiens | NP_001035122.1 | 4 x 10-04 | 394 |
| Calreticulin | Galleria mellonella | BAB79277 | 5 x 10-103 | 714 |
| DNA replication licensing factor mcm2 | Xenopus tropicalis | AAH75567 | 2 x 10-47 | 490 |
| RNA binding motif protein 4 | Aedes aegypti | XP_001657237.1 | 6 x 10-38 | 563 |
| Domino isoform D, CG9696-PD | Apis mellifera | XP_396786 | 9 x 10-61 | 350 |
| Eukaryotic translation initiation factor 2B, subunit 5 epsilon, isoform 3 | Macaca mulatta | XP_001103944 | 5 x 10-32 | 713 |
| Translation initiation factor | Anopheles gambiae | CAD27760.1 | 2 x 10-66 | 708 |
| Secreted nidogen domain protein | Strongylocentrotus purpuratus | XP_001196268.1 | 8 x 10-09 | 466 |
| Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase | Danio rerio | NP_001009884.1 | 4 x 10-18 | 611 |
| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 | Tribolium castaneum | XP_972501.1 | 3 x 10-07 | 354 |
| Deleted in malignant brain tumors 1 | Strongylocentrotus purpuratus | XP_001180356.1 | 2 x 10-04 | 486 |
| ATPase, H+ transporting, lysosomal accessory protein 2, CG8444-PA | Tribolium castaneum | XP_973593.1 | 1 x 10-07 | 562 |
| Kinesin-like protein 2 | Ciona intestinalis | NP_001011659 | 5 x 10-04 | 449 |
| Elongation factor-1 alpha | Libinia emarginata | AAC03149 | 3 x 10-102 | 713 |
| Chromosome-associated protein, CG9802-PA, isoform A | Apis mellifera | XP_393700 | 2 x 10-74 | 652 |
| CWF19-like 2, cell cycle control | Xenopus tropicalis | NP_001039121.1 | 1 x 10-58 | 600 |
| Myosin II essential light chain | Tribolium castaneum | XP_973734 | 6 x 10-15 | 516 |
| Gastrula zinc finger protein XLCGF57.1 | Danio rerio | XP_001344037.1 | 4 x 10-30 | 568 |
| SJCHGC09076 protein | Schistosoma japonicum | AAW26562 | 6 x 10-06 | 559 |
| Citrate synthase | Aedes aegypti | EAT45772.1 | 4 x 10-75 | 478 |
| Zinc finger protein 146 | Strongylocentrotus purpuratus | XP_788425.2 | 2 x 10-20 | 654 |
| Sec23 protein | Drosophila melanogaster | NP_730978.1 | 6 x 10-63 | 465 |
| Elongation factor-2 | Libinia emarginata | AAR01298 | 8 x 10-82 | 538 |
| Hypothetical protein TTHERM_00449680 | Tetrahymena thermophila | XP_001013363.1 | 2 x 10-10 | 506 |
| Calreticulin | Bombyx mori | AAP50845.1 | 1 x 10-128 | 695 |
| RNA-binding protein 5 | Apis mellifera | XP_394165.3 | 4 x 10-43 | 713 |
| Mitochondrial ATP synthase e chain | Aedes albopictus | AAV90734 | 9 x 10-16 | 403 |
| Zgc:113377 | Danio rerio | NP_001025397 | 4 x 10-29 | 697 |
| Inhibitor of Bruton agammaglobulinemai tyrosine kinase | Canis familiaris | XP_539018.2 | 2 x 10-12 | 634 |
*Accession no. GW775090-GW775309 for ESTs from the forward SSH library.