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. 2011 Jan 14;134(2):025104. doi: 10.1063/1.3521267

Table 1.

Minimum and maximum values of dihedral angles, αk(min) and αk(max), and their differences Δαk (in degrees) for the open and closed samples.a

    Open loop
Closed loop
Residue Dihedrals Min Max Δ Min Max Δ
SER φ –168 –120 48 –159 –110 49
  ψ –25 45 70 134 176 42
  ω 143 205 62 160 205 45
  χ1 –178 178 356 –29 –210 181
ALA φ 25 98 73 –166 –118 48
  ψ 5 68 63 –41 15 56
  ω 144 195 51 147 193 46
VAL φ 100 214 114 39 96 57
  ψ –61 82 143 108 176 68
  ω 153 212 59 155 200 45
  χ1 –103 102 205 –99 –42 57
GLY φ –163 –58 105 –175 –92 83
  ψ –36 87 123 –71 8 79
  ω 151 215 64 154 205 51
ASN φ –101 –32 69 –175 –93 82
  ψ 92 152 60 –3 62 65
  ω 158 204 46 170 219 49
  χ1 145 195 50 –101 –34 67
  χ2 33 126 93 83 245 162
ALA φ –89 –43 46 25 91 66
  ψ –67 –15 52 124 178 54
  ω 152 195 43 155 202 47
GLU φ –137 –87 50 165 236 71
  ψ –36 10 46 1 77 76
  ω 161 199 38 148 208 60
  χ1 –78 –28 50 –180 –29 151
  χ2 55 121 66 137 223 86
  χ3 –152 164 316 –180 180 360
SER φ –137 –87 50 165 235 70
  ψ –10 29 39 144 190 46
  ω 164 186 22 –175 –150 25
  χ1 –83 –29 54 172 220 48
a

αk(min), αk(max), and Δαk are defined in Eq. 10; their values were calculated from samples of 1000 loop conformations generated for the open and closed microstates by retaining a conformation every 2 ps from the corresponding 2 ns trajectories.