Table 1.
The list of genes specifically enriched in the rhizome tips relative to other tissues
| Probe Name | OsGI | Function Annotation | q-value % | RT/ST | RT/RI | RT/SI | RT/YL |
|---|---|---|---|---|---|---|---|
| Os.34982.1.A1_at | Os04g17660 | Rhodanese-like domain containing protein | 0.003 | 2.60 | 23.33 | 7.82 | 167.88 |
| Os.8120.1.S1_at | Os04g33570 | CEN-like protein 2 | <0.001 | 1.77 | 14.03 | 8.51 | 42.22 |
| Os.49726.1.S1_at | Os11g05470 | CEN-like protein 3 | 0.029 | 2.24 | 5.13 | 6.04 | 66.16 |
| Os.8203.1.S1_at | Os10g05750 | proline-rich protein | <0.001 | 1.77 | 12.97 | 19.60 | 105.02 |
| Os.21805.1.S1_s_at | Os06g51320 | Gibberellin regulated protein, expressed | 0.046 | 3.62 | 4.94 | 7.33 | 8.44 |
| Os.2367.1.S1_at | Os03g21820 | Alpha-expansin 10 precursor | <0.001 | 3.19 | 12.74 | 7.64 | 28.19 |
| OsAffx.15319.1.S1_at | Os06g08830 | UDP-glucoronosyl and UDP-glucosyl transferase | 0.975 | 1.60 | 1.85 | 2.03 | 1.65 |
| Os.50483.1.S1_at | Os04g42860 | GDSL-like Lipase/Acylhydrolase family protein | 0.003 | 2.19 | 2.84 | 26.46 | 60.78 |
| Os.8666.1.S1_at | Os02g57110 | GDSL-like Lipase/Acylhydrolase family protein | <0.001 | 1.72 | 14.10 | 11.25 | 14.40 |
| OsAffx.15187.1.S1_at | Os05g50960 | Polygalacturonase family protein | 0.003 | 1.61 | 2.60 | 1.85 | 73.35 |
| Os.17076.1.S1_at | Os09g10340 | Cytochrome P450 family protein | <0.001 | 3.63 | 14.96 | 6.62 | 19.18 |
| Os.49861.1.S1_at | Os04g04330 | Leucine Rich Repeat family protein | 0.003 | 3.07 | 3.12 | 2.21 | 9.92 |
| Os.15219.1.S1_at | Os06g11320 | peptidyl-prolyl cis-trans isomerase | <0.001 | 4.23 | 13.23 | 16.75 | 27.63 |
| Os.15454.2.S1_at | Os06g06760 | U-box domain containing protein | 0.003 | 4.04 | 14.32 | 9.09 | 44.53 |
| Os.15789.1.S1_at | Os12g08920 | Peroxidase 43 precursor | 0.019 | 3.66 | 6.61 | 16.15 | 18.90 |
| Os.53726.1.S1_at | Os07g05370 | protein kinase family protein | 0.013 | 2.14 | 6.81 | 3.04 | 57.21 |
| Os.5682.1.S1_at | Os09g30320 | BURP domain containing protein | 0.006 | 2.08 | 2.37 | 2.48 | 2.85 |
| Os.8655.1.S1_at | Os06g31960 | Plant thionin family protein | <0.001 | 1.72 | 16.42 | 8.35 | 53.07 |
| OsAffx.17468.1.S1_s_at | Os08g42080 | ACT domain containing protein | <0.001 | 1.60 | 7.34 | 7.73 | 4.92 |
| Os.33336.1.S1_at | Os01g11350 | bZIP transcription factor family protein | 0.003 | 2.97 | 16.06 | 4.16 | 30.68 |
| OsAffx.2611.1.S1_at | Os02g14910 | bZIP transcription factor family protein | <0.001 | 1.53 | 7.98 | 7.43 | 14.36 |
| Os.28450.1.S1_at | Os01g70730 | flowering promoting factor-like 1 | 0.003 | 4.81 | 3.12 | 7.95 | 5.34 |
| Os.6271.1.S1_at | Os07g39320 | Homeobox domain containing protein | 0.069 | 1.95 | 2.51 | 2.54 | 4.83 |
| Os.9086.1.S1_at | Os03g10210 | Homeobox domain containing protein | 0.003 | 2.21 | 1.63 | 3.59 | 19.50 |
| Os.10050.1.S1_at | Os01g62660 | Myb-like DNA-binding domain | 0.003 | 14.12 | 15.62 | 15.82 | 271.93 |
| Os.12994.1.S1_at | Os12g38400 | Myb-like DNA-binding domain containing protein | <0.001 | 25.60 | 9.56 | 41.36 | 82.54 |
| Os.47323.1.S1_at | Os02g45570 | transcription activator | 0.270 | 3.09 | 2.40 | 2.88 | 10.09 |
| Os.49711.1.S1_at | Os08g35110 | auxin-responsive protein | <0.001 | 2.27 | 11.19 | 12.76 | 18.16 |
| Os.13012.1.S1_at | Os03g49880 | TCP family transcription factor containing protein | <0.001 | 8.88 | 9.27 | 22.59 | 45.56 |
| Os.151.1.S1_x_at | Os03g51690 | Homeobox protein OSH1 | <0.001 | 5.12 | 13.95 | 15.18 | 22.66 |
| Os.54612.1.A1_at | Os02g07310 | Piwi domain containing protein | 0.644 | 2.09 | 3.48 | 2.53 | 4.67 |
| Os.33534.1.S1_s_at | Os07g06620 | YABBY protein | 0.046 | 2.97 | 3.04 | 11.15 | 101.27 |
| Os.4174.1.S1_at | Os08g02070 | Agamous-like MADS box protein AGL12 | 0.003 | 2.42 | 20.57 | 6.84 | 8.35 |
| Os.11344.1.S1_s_at | Os05g48040 | MATE efflux family protein | <0.001 | 10.12 | 13.69 | 12.84 | 45.27 |
| Os.28462.1.S1_s_at | Os12g02290 | Nonspecific lipid-transfer protein 5 precursor | <0.001 | 3.08 | 21.75 | 17.68 | 60.66 |
| Os.54305.1.S1_at | Os06g12610 | Auxin efflux carrier component 1 | <0.001 | 2.11 | 6.12 | 4.90 | 14.89 |
| Os.14955.1.S1_at | Os03g31730 | expressed protein | 0.003 | 8.31 | 17.88 | 12.88 | 57.28 |
| Os.15725.1.S1_at | Os03g64050 | expressed protein | 0.029 | 3.71 | 3.83 | 5.88 | 3.67 |
| Os.22569.1.S1_at | Os03g30740 | expressed protein | 0.003 | 3.89 | 3.40 | 4.57 | 8.44 |
| Os.27641.1.A1_at | Os04g23140 | expressed protein | 0.006 | 3.18 | 3.76 | 4.31 | 3.35 |
| Os.3496.1.S1_at | Os01g12110 | expressed protein | 0.006 | 2.87 | 5.95 | 3.63 | 11.49 |
| Os.47356.1.A1_at | Os10g31930 | expressed protein | 0.011 | 2.27 | 4.40 | 4.46 | 11.80 |
| Os.8682.1.S1_a_at | Os10g08780 | expressed protein | <0.001 | 1.95 | 1.68 | 3.24 | 6.41 |
| Os.8682.2.S1_x_at | Os10g08780 | expressed protein | 0.013 | 1.63 | 2.96 | 3.23 | 2.53 |
| OsAffx.11145.1.S1_s_at | Os01g21590 | expressed protein | 0.139 | 1.82 | 1.77 | 1.61 | 1.83 |
| OsAffx.28068.1.S1_at | Os06g42730 | expressed protein | <0.001 | 1.52 | 1.75 | 2.20 | 5.51 |
| OsAffx.30149.1.S1_s_at | Os09g36160 | expressed protein | <0.001 | 1.51 | 4.94 | 3.72 | 14.06 |
| Os.9836.1.S1_at | Os11g10590 | hypothetical protein | 0.003 | 1.62 | 4.21 | 3.15 | 61.66 |
| Os.28030.2.A1_at | Os06g0696400 | Xyloglycan endo-transglycosylase precursor | 0.003 | 3.15 | 6.76 | 6.45 | 29.74 |
| Os.57006.1.S1_at | Os09g0459200 | Conserved hypothetical protein | <0.001 | 1.99 | 12.54 | 11.69 | 56.03 |
| Os.7285.1.S1_at | Os05g0518600 | SL-TPS/P | <0.001 | 1.91 | 2.67 | 6.60 | 2.21 |
| Os.7317.2.S1_at | Os01g0914300 | Plant lipid transfer domain containing protein | 0.011 | 1.88 | 3.24 | 8.35 | 8.22 |
| Os.7431.1.S1_a_at | Os04g0272700 | UDP-glucuronosyl/UDP-glucosyltransferase | 0.006 | 1.87 | 5.92 | 3.91 | 5.73 |
| Os.7567.1.S1_at | Os10g0554800 | Plant lipid transfer domain containing protein | 0.003 | 1.84 | 4.24 | 6.96 | 13.89 |
| Os.7575.1.S1_at | Os04g0619800 | Conserved hypothetical protein | 0.106 | 1.90 | 2.57 | 1.83 | 4.64 |
| Os.9167.1.A1_at | Os06g0649600 | Non-protein coding transcript | 0.011 | 1.62 | 7.47 | 3.17 | 21.16 |
| OsAffx.22476.1.S1_x_at | Os07g0160100 | YABBY2 | <0.001 | 1.59 | 2.46 | 2.69 | 299.82 |
| OsAffx.27291.1.S1_at | Os05g43440 | DNA-binding protein | <0.001 | 1.53 | 1.96 | 2.23 | 222.60 |
Note: RT/ST, RT/RI, RT/SI, and RT/YL indicate ratio of signal1 (RT)/signal2 (ST, RI, SI, and YL) from Wilcoxon Rank-Sum tests, respectively.