Table 1.
Densities of SNPs and InDels on individual chromosomes detected between Omachi and Nipponbare genomes
| No. of SNPs | No. of insertions | No. of deletions | |
|---|---|---|---|
| Chromosome 1 | 14,436 (320.3) | 1,883 (41.8) | 1,926 (42.7) |
| Chromosome 2 | 10,103 (274.4) | 1,468 (39.9) | 1,621 (44.0) |
| Chromosome 3 | 5,877 (157.7) | 877 (23.5) | 992 (26.6) |
| Chromosome 4 | 27,576 (768.9) | 3,452 (96.3) | 4,371 (121.9) |
| Chromosome 5 | 5,715 (190.2) | 933 (31.1) | 1,091 (36.3) |
| Chromosome 6 | 15,107 (470.3) | 1,489 (46.3) | 1,690 (52.6) |
| Chromosome 7 | 12,806 (421.8) | 1,452 (47.8) | 1,686 (55.5) |
| Chromosome 8 | 10,682 (374.4) | 1,222 (42.8) | 1,447 (50.7) |
| Chromosome 9 | 2,902 (121.7) | 411 (17.2) | 490 (20.6) |
| Chromosome 10 | 4,405 (186.2) | 659 (27.9) | 756 (31.9) |
| Chromosome 11 | 17,258 (559.8) | 1,759 (57.1) | 2,102 (68.2) |
| Chromosome 12 | 5,595 (201.6) | 843 (30.4) | 1,146 (41.3) |
| Total | 132,462 (346.6) | 16,448 (43.0) | 19,318 (50.5) |
The numbers in parentheses show the average numbers of SNPs and InDels described as the number per 1 Mb genome sequence.