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. 2011 Feb 10;7(2):e1001296. doi: 10.1371/journal.pgen.1001296

Table 2. Number of genes revealing significant positive selection in the CodeML analysis for lineage 3 and lineage 4.

CodeML results a
Lineage 3 Total M2a vs. M1a (p<0.05) M2a vs. M1a (p<0.01)
All core genes 1096 62 34
Genes with dn/ds ≥0.25 133 29 20
Lineage 4
All core genes 1090 26 14
Genes with dn/ds ≥0.25 86 12 8
a

All genes for which model M2a (PositiveSelection) fitted the data significantly better than model M1a (NearlyNeutral) for two different p-values.