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. 2010 Dec 8;286(7):5347–5358. doi: 10.1074/jbc.M110.169045

TABLE 2.

Distances between polar atoms in the distal pockets of L86A CerHbO2, wild-type CerHbO2, and wild-type aquomet CerHb

The in and out conformation of the Gln-44(E7) side chain are indicated by the superscript “i” and “o” letters.

wt CerHbO2 (PDB 1kr7)a Xenon-free L86A CerHbO2 (PDB 2xkg) Xenon-bound L86A CerHbO2 (PDB 2xkh) wt aquomet CerHb (PDB 2xki)
Fe—O2 (Å) 1.94 1.97 1.90
Fe—water (Fe3+) (Å) 2.14
Fe-O1-O2 angle (°) 103 110 −105
Tyr-11(B10) OH—O2 (Å) 2.57 2.47 2.46
Tyr-11(B10) OH—water (Fe3+) (Å) 2.87
Gln-44(E7) NE2—O1 (Å) 2.60 2.96
Gln-44(E7) NE2—O2 (Å) 2.65
Gln-44(E7) NE2—water (Fe3+) (Å) 2.72i, 7.13o
Tyr-11(B10) OH—Thr-48(E11) OG1 (Å) 2.59 2.62 2.75 2.68
Tyr-11(B10) OH—Gln-44(E7) NE2 (Å) 3.24 3.33 3.41i, 7.97o 3.59
Gln-44(E7) NE2—Thr-48(E11) OG1 (Å) 3.53 3.34 3.48i, 7.50o 3.34
Gln-44(E7) NE2—solvent water (Å) 2.72o 2.83o
Solvent water—Ala-40(E3) O (Å) 2.59o 2.73o

a Structure was reported in Pesce et al. (6).