Table 3. Top paralog families for ΨG and Ga.
| Rankings for ΨGb | ||
| Name of family representative |
ΨGfamily |
Note on family |
| B0281.2E | 59 | Reverse transcriptase |
| B0334.7E | 51 | 7-TMc receptor |
| B0403.1E | 31 | Uncharacterised |
| B0213.7E | 27 | 7-TMc receptor |
| AC3.1 | 22 | Uncharacterised |
| C04G2.4E | 21 | Major sperm-specific proteins |
| B0205.2 | 20 | Uncharacterised |
| B0462.3E | 19 | Uncharacterised |
| B0213.1E | 19 | TcA transposase family |
|
C03A7.3 |
17 |
7-TMc receptor |
| Rankings for G | ||
| Name of family representative |
Gfamily |
Note in family |
| B0280.8E | 216 | Ligand-binding domain of Nuclear Hormone receptor |
| B0334.7E | 193 | 7-TMc receptor |
| B0213.7E | 188 | 7-TMc receptor |
| B0205.7E | 124 | Casein-kinase protein kinase |
| B0047.1E | 93 | MATH domain |
| C03A7.3 | 70 | 7-TMc receptor |
| AH6.1E | 70 | Guanylyl cyclase/receptor tyrosine kinase |
| B0213.10E | 70 | Cytochrome P450 |
| B0207.1E | 70 | Protein tyrosine phosphatase |
| AC3.2E | 68 | UDP-glucosyltransferase |
aParalog families for EST-matched proteins are in bold and are labeled with a subscript E. Family representatives are underlined if they are common to both lists.
bThe family rankings for ΨG including additional worm protein matches for 0.01 < e-value ≤ 0.001 were also derived. The total for ΨG including these matches is 2401 predicted pseudogenes (Fig. 1A). The top 10 rankings, in decreasing order, are as follows (number of pseudogenes in parentheses): 1, B0281.2 (61); 2, B0334.7 (53); 3, B0403.1 (33); 4, AC3.1 (29); 5, B0213.7 (28); =6, B0205.2 (24); =6, B0213.1 (24); 8, C04G2.4 (22); 9, B0462.3 (20); =10, C03A7.3 (18); =10, B0302.3 (18).
cSeven-transmembrane.