Table 4. Other pseudogenic homology fragments that match a PROTOMAP family representative but with no detected homology to WormPep.
| Rank |
Name of PROTOMAP
family representative |
Number of
matches |
Organism of
closest matcha |
Note on family representative |
| 1 | YJA7_YEAST | 7 ******* | Yeast | Hypothetical protein in yeast |
| 2 = | XPD_MOUSE | 5 ***** | Human | Xeroderma pigmentosum, group D complementing protein |
| 2 = | CPSA_BOVIN | 5 ***** | Bovine | Cleavage and polyadenylation specificity factor |
| 4 = | THB_RANCA | 4 **** | Xenopus laevis | Thyroid hormone receptor β |
| 4 = | SEX_HUMAN | 4 **** | Human | SEX gene |
| 4 = | MDR1_RAT | 4 **** | Drosophila | Multidrug resistance protein 1 |
| 7 = | YVFB_VACCC | 3 *** | Vaccinia virus | Hypothetical vaccinia virus protein |
| 7 = | VHRP_VACCC | 3 *** | Drosophila | Host range protein from vaccinia |
| 7 = | IF4V_TOBAC | 3 *** | Human | Eukaryotic initiation factor 4A |
| 7 = | ACRR_ECOLI | 3 *** | Escherichia coli | Acrab operon repressor |
aDetermined by a database search with the PSI-BLAST alignment program (44).