Table 6.
Location of Blastn matches from Variable Number of Tandem Repeat -sequences from F. philomiragia DSM7535T.
| Marker locus | BP in query | Identity | Location | Adjacent genes | E-value |
|---|---|---|---|---|---|
| Fnn-VNTR2 | 186 | 96% | Intergenic (1900473-1900533) | Bor lipoprotein/NADPH-quinone reductase | 7 × 10-28 |
| Fnn-VNTR4 | 394 | 97% | Intragenic (695610- 695415) | DNA-directed DNA polymerase | 1 × 10-88 |
| Fnn-VNTR5 A | 333 | 99% | Intragenic (495433-496083) | FTN_0396 hypothetical protein | 3 × 10-79 |
| Fnn-VNTR6 | 327 | 100% | Intragenic (1129799-1130125) | 50S ribosomal protein L10 | 7 × 10-170 |
| Fnn-VNTR7 | 458 | 97% | Intragenic (1661303-1660846) | FTN_1059 hypothetical and trigger factor protein | 0 |
The Blastn search was performed using the complete amplicon of the primer pairs. All locations were identified in F. philomiragia ATCC25017T (Accession number CP000937). Sequences were derived from F. philomiragia DSM7535T unless otherwise stated.
VNTR-sequence obtained from F. noatunensis ssp. noatunensis GM2212A