Table 1. Intermolecular hydrogen bonding distances (Å) and ligand torsion angles in degrees (α1, α2 and α3) in the d(GGTAATTACC)2 + H43254 complex.
|
Hydrogen bonding interactions |
|
|
|
|
|
|
bz2 NH–A5 N3 |
bz2 NH–T7* O2 |
bz1 NH–T6* O2 |
bz1 NH–T6 O2 |
tp NH–T7 O2 |
tp NH–A5* N3 |
CRa |
2.26 (0.22) |
2.33 (0.20) |
2.72 (0.19) |
1.87 (0.10) |
2.42 (0.34) |
2.36 (0.28) |
CUb |
2.52 (0.30) |
2.41 (0.24) |
2.18 (0.23) |
2.41 (0.27) |
2.56 (0.41) |
2.48 (0.28) |
|
Bound conformation of H43254 |
|
|
|
|
|
|
α1 |
|
α2 |
|
α3 |
|
CRa |
0.3 (4.2) |
|
10.0 (4.1) |
|
18.9 (6.4) |
|
CUb | 0.8 (4.0) | 1.3 (4.0) | 7.0 (7.7) |
Proton–heavy atom hydrogen bond distances and ligand torsion angles are shown for the mean structure together with one standard deviation from the mean in parentheses.
aCR, restrained simulation, mean (±SD) calculated over final 400 ps.
bCU, unrestrained simulation, mean (±SD) calculated over final 600 ps.