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. 2001 Feb 1;29(3):693–702. doi: 10.1093/nar/29.3.693

Table 1. Intermolecular hydrogen bonding distances (Å) and ligand torsion angles in degrees (α1, α2 and α3) in the d(GGTAATTACC)2 + H43254 complex.

 
Hydrogen bonding interactions
 
 
 
 
 
 
bz2 NH–A5 N3
bz2 NH–T7* O2
bz1 NH–T6* O2
bz1 NH–T6 O2
tp NH–T7 O2
tp NH–A5* N3
CRa
2.26 (0.22)
2.33 (0.20)
2.72 (0.19)
1.87 (0.10)
2.42 (0.34)
2.36 (0.28)
CUb
2.52 (0.30)
2.41 (0.24)
2.18 (0.23)
2.41 (0.27)
2.56 (0.41)
2.48 (0.28)
 
Bound conformation of H43254
 
 
 
 
 
 
α1
 
α2
 
α3
 
CRa
0.3 (4.2)
 
10.0 (4.1)
 
18.9 (6.4)
 
CUb 0.8 (4.0)   1.3 (4.0)   7.0 (7.7)  

Proton–heavy atom hydrogen bond distances and ligand torsion angles are shown for the mean structure together with one standard deviation from the mean in parentheses.

aCR, restrained simulation, mean (±SD) calculated over final 400 ps.

bCU, unrestrained simulation, mean (±SD) calculated over final 600 ps.