Table 3.
List of the 129 genes repressed in all treatments
| Fold change1 | ||||||||
|---|---|---|---|---|---|---|---|---|
| Gene | Putative function | R | B | TS | PQ | MM | MM-C | MM-N |
| MGG_07766.6 | Unknown | -11.0 | -63.6 | -74.5 | -99.2 | -59.9 | -31.0 | -114.6 |
| MGG_02709.6 | Unknown | -7.5 | -7.6 | -20.1 | -3.2 | -15.6 | -2.9 | -6.8 |
| MGG_00312.6 | Glyoxylate reductase | -5.6 | -8.9 | -4.0 | -3.1 | -4.0 | -2.4 | -2.1 |
| MGG_11617.6 | Unknown | -5.6 | -9.5 | -42.2 | -28.0 | -52.5 | -12.1 | -20.0 |
| MGG_03144.6 | Ulp1 protease family protein | -5.4 | -8.9 | -11.6 | -2.4 | -10.3 | -2.8 | -3.9 |
| MGG_09345.6 | Aminotransferase (2E-94) | -5.4 | -6.6 | -9.7 | -5.5 | -7.6 | -3.9 | -7.2 |
| MGG_09158.6 | Unknown | -5.3 | -17.8 | -64.0 | -60.0 | -48.9 | -11.0 | -39.6 |
| MGG_05994.6 | Unknown | -5.3 | -18.6 | -4.4 | -5.7 | -4.6 | -2.0 | -4.6 |
| MGG_00460.6 | Rhamnolipids biosynthesis | -5.1 | -6.3 | -39.9 | -24.5 | -33.6 | -6.5 | -7.6 |
| MGG_03416.6 | Acetyltransferase | -4.9 | -16.3 | -2.4 | -3.3 | -2.5 | -3.2 | -3.4 |
| MGG_07911.6 | Methyltransferase | -4.6 | -6.4 | -36.1 | -34.3 | -25.5 | -7.1 | -16.3 |
| MGG_11610.6 | Unknown | -4.6 | -6.5 | -38.3 | -24.7 | -25.0 | -8.4 | -7.8 |
| MGG_05985.6 | Ankyrin/HET domain-containing prot (8E-44) | -4.5 | -5.9 | -10.0 | -10.5 | -9.7 | -2.5 | -5.4 |
| MGG_03639.6 | Arginyl-tRNA synthetase (5E-30) | -4.5 | -8.1 | -39.7 | -27.5 | -31.0 | -10.5 | -21.1 |
| MGG_10704.6 | GNAT family acetyltransferase (1E-25) | -4.4 | -4.6 | -7.5 | -5.8 | -6.8 | -4.9 | -14.0 |
| MGG_09031.6 | Transcriptional regulator (7E-65) | -4.3 | -4.7 | -28.0 | -21.3 | -18.1 | -7.9 | -14.5 |
| MGG_05055.6 | Alcohol dehydrogenase | -4.2 | -6.0 | -23.2 | -9.9 | -30.4 | -6.2 | -9.7 |
| MGG_01668.6 | Unknown | -4.2 | -6.4 | -5.0 | -3.4 | -4.8 | -2.4 | -3.8 |
| MGG_01013.6 | Eukaryotic translation initiation factor | -4.1 | -4.6 | -6.1 | -6.3 | -5.5 | -2.3 | -3.1 |
| MGG_05001.6 | RNase P and RNase MRP subunit (2E-10) | -4.1 | -11.4 | -7.5 | -5.5 | -7.3 | -2.8 | -6.4 |
| MGG_10859.6 | Linoleate diol synthase | -4.0 | -5.9 | -12.1 | -10.5 | -10.4 | -4.7 | -6.0 |
| MGG_04048.6 | Aspartic proteinase | -4.0 | -4.8 | -11.3 | -11.0 | -6.2 | -2.9 | -8.0 |
| MGG_14917.6 | Ring canal kelch protein | -4.0 | -4.7 | -2.7 | -2.9 | -2.5 | -3.0 | -3.0 |
| MGG_08333.6 | Unknown | -4.0 | -5.9 | -2.3 | -2.5 | -2.2 | -4.2 | -5.6 |
| MGG_05914.6 | Tyrosinase (1E-52) | -3.9 | -7.0 | -28.6 | -15.5 | -22.7 | -9.5 | -13.9 |
| MGG_09255.6 | Kinesin-II 85 kDa subunit | -3.8 | -6.5 | -9.4 | -6.6 | -7.2 | -6.4 | -4.8 |
| MGG_00197.6 | Unknown | -3.8 | -7.3 | -21.5 | -7.4 | -19.2 | -2.1 | -9.3 |
| MGG_01825.6 | Unknown | -3.8 | -8.3 | -10.6 | -7.0 | -10.4 | -3.4 | -4.9 |
| MGG_01439.6 | Inorganic phosphate transporter PHO84 | -3.7 | -3.5 | -5.5 | -5.0 | -3.2 | -3.8 | -2.8 |
| MGG_00791.6 | Lactamase_B domain containing protein | -3.7 | -5.7 | -5.4 | -4.6 | -5.3 | -3.6 | -11.7 |
| MGG_09326.6 | Unknown | -3.7 | -2.8 | -7.6 | -14.0 | -5.7 | -3.6 | -5.6 |
| MGG_03308.6 | Unknown | -3.7 | -7.2 | -14.3 | -7.0 | -8.3 | -4.3 | -12.0 |
| MGG_10755.6 | Arylesterase/monooxygenase | -3.6 | -10.7 | -28.1 | -23.3 | -5.7 | -5.9 | -15.5 |
| MGG_06470.6 | DNA repair helicase RAD25 | -3.5 | -5.2 | -7.7 | -3.8 | -7.4 | -2.2 | -3.2 |
| MGG_09893.6 | Molybdopterin synthase small subunit CnxG | -3.5 | -6.9 | -3.9 | -10.7 | -4.0 | -9.1 | -10.6 |
| MGG_03651.6 | Unknown | -3.5 | -5.3 | -18.3 | -6.7 | -17.1 | -7.5 | -9.0 |
| MGG_04024.6 | Putative b-zip transcription factor (4E-05) | -3.5 | -9.1 | -18.0 | -14.3 | -15.3 | -4.5 | -15.7 |
| MGG_05100.6 | PR-1-like protein (3E-18) | -3.5 | -7.7 | -34.4 | -14.1 | -15.2 | -4.7 | -13.0 |
| MGG_00919.6 | GMP synthase | -3.4 | -5.3 | -2.7 | -2.3 | -2.6 | -2.9 | -2.7 |
| MGG_03690.6 | Cholinephosphotransferase 1 | -3.4 | -3.3 | -5.4 | -6.7 | -5.6 | -3.7 | -3.3 |
| MGG_14045.6 | Unknown | -3.4 | -6.3 | -3.9 | -3.8 | -3.7 | -3.6 | -10.3 |
| MGG_08816.6 | Unknown | -3.4 | -8.4 | -16.8 | -13.8 | -8.7 | -5.9 | -12.7 |
| MGG_15446.6 | Unknown | -3.4 | -3.5 | -4.2 | -13.3 | -2.4 | -2.9 | -4.7 |
| MGG_00296.6 | Glycosyl hydrolase | -3.3 | -3.8 | -9.4 | -3.5 | -7.8 | -2.3 | -5.9 |
| MGG_12911.6 | tRNA 2'-phosphotransferase 1 | -3.3 | -5.8 | -6.1 | -5.3 | -5.6 | -3.5 | -6.8 |
| MGG_04401.6 | F-box protein | -3.3 | -6.3 | -10.7 | -11.7 | -10.5 | -7.7 | -11.7 |
| MGG_05239.6 | DNA repair and recombination protein RAD26 | -3.3 | -7.0 | -5.7 | -4.1 | -5.4 | -5.4 | -4.6 |
| MGG_02611.6 | L-aminoadipate-semialdehyde dehydrogenase | -3.3 | -4.3 | -3.3 | -2.5 | -3.7 | -3.2 | -2.9 |
| MGG_07950.6 | Related to glyoxal oxidase precursor (4E-10) | -3.3 | -3.2 | -7.0 | -8.8 | -2.3 | -3.8 | -8.4 |
| MGG_03415.6 | Ankyrin repeat/SAM domain protein 6 (4E-58) | -3.2 | -6.0 | -3.2 | -3.6 | -3.1 | -2.2 | -2.6 |
| MGG_04395.6 | F-box domain-containing protein | -3.1 | -3.7 | -2.5 | -3.6 | -2.5 | -3.8 | -3.2 |
| MGG_09221.6 | Related to glyoxal oxidase precursor (3E-09) | -3.1 | -14.6 | -23.3 | -18.4 | -17.2 | -5.3 | -15.9 |
| MGG_02762.6 | ATP-dependent RNA helicase DED1 | -3.0 | -9.2 | -7.5 | -8.2 | -4.9 | -5.8 | -12.0 |
| MGG_01260.6 | Serine/threonine-protein kinase psk1 | -3.0 | -4.3 | -5.6 | -10.2 | -5.7 | -8.0 | -9.9 |
| MGG_09990.6 | Minor extracellular protease vpr | -3.0 | -4.6 | -19.2 | -21.6 | -16.6 | -6.9 | -11.3 |
| MGG_09010.6 | Transcriptional activator hac1 | -3.0 | -2.2 | -2.8 | -5.5 | -2.5 | -3.1 | -3.3 |
| MGG_03061.6 | Ankyrin repeat-containing protein | -3.0 | -6.0 | -14.3 | -13.6 | -12.0 | -5.8 | -11.2 |
| MGG_02489.6 | Branched-chain-amino-acid aminotransferase | -3.0 | -5.0 | -3.6 | -3.7 | -3.5 | -4.2 | -3.3 |
| MGG_02101.6 | Methyltransferase type 11 (6E-45) | -3.0 | -6.4 | -3.0 | -5.7 | -2.9 | -2.6 | -8.5 |
| MGG_01297.6 | Flavin-nucleotide-binding protein (3E-66) | -3.0 | -3.4 | -12.4 | -5.4 | -11.2 | -9.9 | -12.8 |
| MGG_01806.6 | Nicotinamide n-methyltransferase (2E-12) | -3.0 | -5.7 | -2.8 | -4.7 | -2.5 | -2.8 | -6.6 |
| MGG_06382.6 | Meiosis-specific ser/threo kinase mek1 (2E-34) | -3.0 | -5.9 | -5.4 | -6.4 | -3.7 | -2.8 | -3.9 |
| MGG_03138.6 | Unknown | -3.0 | -2.1 | -6.2 | -6.0 | -5.8 | -4.5 | -3.4 |
| MGG_06045.6 | YIPF1 (4E-106) | -2.9 | -2.9 | -5.0 | -11.5 | -4.8 | -4.1 | -2.3 |
| MGG_15240.6 | Unknown | -2.9 | -6.6 | -5.4 | -7.5 | -3.6 | -3.4 | -7.4 |
| MGG_05990.6 | mRNA-capping enzyme subunit beta (1E-60) | -2.9 | -3.9 | -3.4 | -4.7 | -3.3 | -4.0 | -2.7 |
| MGG_08700.6 | SET domain-containing protein 5 (2E-15) | -2.9 | -3.1 | -25.7 | -17.3 | -17.2 | -4.9 | -11.3 |
| MGG_07283.6 | Ulp1 protease family protein | -2.8 | -5.5 | -4.5 | -2.4 | -4.0 | -2.3 | -3.1 |
| MGG_09019.6 | Secretory phospholipase A2 | -2.8 | -6.5 | -23.5 | -15.4 | -18.8 | -12.8 | -19.4 |
| MGG_07912.6 | Erythrocyte band 7 integral membrane protein | -2.8 | -4.7 | -4.6 | -4.1 | -4.3 | -2.8 | -4.9 |
| MGG_07233.6 | Potassium transporter, putative (4E-114) | -2.8 | -5.0 | -3.3 | -3.7 | -3.6 | -7.0 | -7.7 |
| MGG_01341.6 | Zinc metallopeptidase (3E-91) | -2.8 | -3.4 | -4.0 | -4.2 | -3.7 | -3.9 | -3.2 |
| MGG_10259.6 | Unknown | -2.8 | -5.9 | -5.5 | -5.6 | -2.3 | -3.3 | -6.2 |
| MGG_05254.6 | Histone-lysine N-methyltransferase | -2.7 | -3.6 | -5.5 | -7.5 | -5.3 | -5.1 | -4.6 |
| MGG_00419.6 | Major facilitator superfamily transporter | -2.7 | -2.7 | -30.5 | -20.8 | -11.4 | -8.8 | -14.0 |
| MGG_01014.6 | C-1-tetrahydrofolate synthase | -2.7 | -3.3 | -7.3 | -6.4 | -6.6 | -3.2 | -3.5 |
| MGG_07192.6 | Unknown | -2.7 | -3.1 | -9.0 | -7.5 | -7.8 | -3.1 | -2.9 |
| MGG_07949.6 | Choline dehydrogenase (2E-27) | -2.7 | -2.7 | -14.5 | -11.3 | -15.6 | -6.2 | -12.2 |
| MGG_07328.6 | Stress response RCI peptide, putative (3E-21) | -2.7 | -4.5 | -2.5 | -2.8 | -2.3 | -2.7 | -3.3 |
| MGG_00013.6 | Unknown | -2.7 | -3.1 | -13.5 | -9.6 | -2.8 | -4.2 | -11.5 |
| MGG_04595.6 | Unknown | -2.7 | -3.3 | -9.7 | -2.3 | -6.2 | -2.4 | -7.7 |
| MGG_05181.6 | Cell wall anchored protein (1E-17) | -2.7 | -2.8 | -10.1 | -7.7 | -4.1 | -7.0 | -8.7 |
| MGG_09827.6 | Sugar transporter family protein | -2.6 | -6.6 | -8.8 | -11.6 | -8.1 | -2.9 | -10.0 |
| MGG_01309.6 | Histidine biosynthesis trifunctional protein | -2.6 | -3.2 | -3.5 | -3.1 | -3.6 | -2.7 | -3.8 |
| MGG_06888.6 | Glutamine synthetase | -2.6 | -2.2 | -3.5 | -4.2 | -3.1 | -3.1 | -6.2 |
| MGG_00481.6 | Glutamate 5-kinase | -2.6 | -3.4 | -5.3 | -6.1 | -5.2 | -5.6 | -3.7 |
| MGG_04330.6 | Mitochondrial ribosomal protein subunit S4 | -2.6 | -3.7 | -2.7 | -2.3 | -2.6 | -2.6 | -2.5 |
| MGG_04356.6 | ATP phosphoribosyltransferase | -2.5 | -4.8 | -2.5 | -3.1 | -2.5 | -3.0 | -3.7 |
| MGG_04868.6 | Purine-cytosine permease FCY22 | -2.5 | -3.8 | -4.5 | -4.1 | -4.0 | -2.5 | -2.9 |
| MGG_13245.6 | Translation regulator GCD7 | -2.5 | -5.3 | -3.6 | -3.0 | -3.5 | -2.1 | -4.0 |
| MGG_09068.6 | NADPH-dep 1-acyldihydroxyacetone phos reductase | -2.5 | -4.7 | -15.2 | -13.6 | -6.1 | -2.9 | -7.2 |
| MGG_01751.6 | F-box and WD domain-containing protein | -2.5 | -2.3 | -2.2 | -2.3 | -2.3 | -2.2 | -2.3 |
| MGG_02937.6 | Histone-lys N-methyltransfer. (Ash1) (6E-88) | -2.5 | -3.6 | -4.5 | -5.6 | -4.9 | -6.4 | -4.2 |
| MGG_03916.6 | Unknown | -2.5 | -3.4 | -8.9 | -8.6 | -8.8 | -2.9 | -6.8 |
| MGG_03698.6 | Unknown | -2.5 | -3.7 | -2.5 | -2.5 | -2.6 | -2.9 | -2.1 |
| MGG_10544.6 | Integral membrane protein (4E-18) | -2.5 | -8.3 | -38.6 | -23.4 | -15.0 | -17.6 | -16.6 |
| MGG_10192.6 | Eukaryotic translation initiation factor 3 sub A | -2.4 | -2.7 | -3.4 | -3.6 | -3.5 | -3.2 | -3.3 |
| MGG_15047.6 | Major facilitator superfamily transporter | -2.4 | -7.9 | -17.6 | -21.5 | -6.3 | -12.2 | -18.6 |
| MGG_09373.6 | CCCH zinc finger DNA binding protein | -2.4 | -3.8 | -5.0 | -7.1 | -4.8 | -7.2 | -6.3 |
| MGG_12949.6 | GTP-binding protein 1 | -2.4 | -5.4 | -11.0 | -10.0 | -11.1 | -7.6 | -10.1 |
| MGG_00521.6 | GTP-binding protein (0.0) | -2.4 | -3.8 | -2.9 | -2.4 | -2.9 | -2.2 | -3.4 |
| MGG_10037.6 | Unknown | -2.4 | -4.5 | -24.4 | -16.8 | -27.0 | -17.9 | -25.4 |
| MGG_15066.6 | Unknown | -2.4 | -6.9 | -11.1 | -4.8 | -6.6 | -3.6 | -7.8 |
| MGG_15144.6 | Unknown | -2.4 | -5.8 | -3.9 | -9.0 | -2.2 | -3.3 | -5.4 |
| MGG_15324.6 | Unknown | -2.4 | -5.7 | -3.4 | -4.7 | -2.2 | -2.4 | -5.9 |
| MGG_05749.6 | Unknown | -2.4 | -5.1 | -10.7 | -14.5 | -5.1 | -6.7 | -9.8 |
| MGG_00369.6 | Cell division cycle protein 123 | -2.3 | -3.3 | -7.3 | -6.1 | -7.1 | -2.6 | -5.4 |
| MGG_01453.6 | Serine peptidase (3E-113) | -2.3 | -3.1 | -5.6 | -6.3 | -2.9 | -2.5 | -2.5 |
| MGG_06463.6 | Unknown | -2.3 | -5.8 | -6.0 | -6.8 | -3.8 | -5.3 | -10.0 |
| MGG_04609.6 | Unknown | -2.3 | -4.5 | -4.3 | -4.1 | -4.1 | -4.3 | -6.5 |
| MGG_04058.6 | Oxidoreductase/dehydrogenase (3E-151) | -2.3 | -2.6 | -2.9 | -3.5 | -2.6 | -2.9 | -3.1 |
| MGG_02893.6 | Integral membrane protein (1E-04) | -2.3 | -2.8 | -4.2 | -2.1 | -3.9 | -3.4 | -5.5 |
| MGG_05987.6 | Unknown | -2.3 | -3.6 | -6.4 | -7.8 | -5.6 | -6.1 | -7.5 |
| MGG_01826.6 | Cell cycle control protein (Cwf26) (2E-57) | -2.3 | -3.1 | -4.7 | -5.4 | -4.4 | -2.2 | -2.9 |
| MGG_07284.6 | WD repeat-containing protein pop3 | -2.2 | -4.8 | -10.3 | -10.6 | -9.5 | -6.1 | -6.6 |
| MGG_05322.6 | Zinc finger protein 467 | -2.2 | -4.9 | -3.5 | -4.3 | -3.5 | -3.3 | -5.1 |
| MGG_08582.6 | 6-phosphofructo-2-kinase 1 | -2.2 | -2.9 | -3.8 | -3.3 | -4.1 | -4.6 | -2.9 |
| MGG_08054.6 | Chitinase 1 | -2.2 | -3.5 | -2.3 | -2.1 | -2.3 | -2.6 | -4.1 |
| MGG_01087.6 | Ribosome biogenesis protein TSR1 | -2.2 | -2.8 | -4.5 | -4.4 | -4.0 | -3.4 | -3.5 |
| MGG_05748.6 | Unknown | -2.2 | -4.1 | -4.6 | -8.1 | -4.8 | -6.8 | -6.0 |
| MGG_13582.6 | Unknown | -2.2 | -4.9 | -4.3 | -4.5 | -3.5 | -7.9 | -11.1 |
| MGG_15292.6 | V-type ATPase, C subfamily protein (1E-17) | -2.2 | -5.3 | -17.6 | -16.4 | -8.2 | -8.1 | -14.4 |
| MGG_00893.6 | Pfs and NB-ARC domain-containing protein | -2.1 | -4.4 | -6.3 | -4.6 | -2.9 | -3.3 | -3.5 |
| MGG_03493.6 | Unknown | -2.1 | -3.6 | -9.9 | -7.9 | -5.7 | -2.9 | -6.4 |
| MGG_04959.6 | Unknown | -2.1 | -3.6 | -7.5 | -6.9 | -5.7 | -3.3 | -6.8 |
| MGG_15343.6 | Unknown | -2.1 | -3.6 | -6.3 | -6.0 | -4.5 | -3.3 | -5.0 |
| MGG_07089.6 | Poly(A) polymerase | -2.0 | -3.7 | -3.3 | -2.7 | -3.2 | -2.3 | -2.7 |
| MGG_05432.6 | Asparaginyl-tRNA synthetase | -2.0 | -3.4 | -3.5 | -3.3 | -2.4 | -2.6 | -4.2 |
| MGG_08133.6 | Pre-mRNA-processing factor 17 | -2.0 | -2.7 | -6.6 | -7.0 | -6.5 | -5.3 | -6.2 |
1list sorted in ascending fold-change in the rice treatment. R: rice at 72 hpi; B: barley at 72 hpi; TS: temperature up shift, PQ: Paraquat, MM: minimal medium, MM-C: carbon limitation, MM-N: nitrogen limitation. The adjusted P-values for these genes are < 0.01.