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. Author manuscript; available in PMC: 2012 Feb 9.
Published in final edited form as: J Am Chem Soc. 2011 Jan 11;133(5):1553–1562. doi: 10.1021/ja109207m

Table 2.

Summary of proteolytic cleavage of inactivated DDAH with endoprotease V8a

DDAH sequence positions Calc’d peptide Observed peptide
Plus leader (−18 to 0) Mass (Da) Mass (Da)b
95-105 1322.70 1322.72
95-114 2275.20 2275.22
95-129 3910.90 3910.92
106-114 970.51 970.53
106-129 2606.21 2606.24
115-129 1653.72 1653.72
115-129 + Oxc 1669.71 1669.72
115-129 + 2 Ox 1685.71 1685.71
130-146 1829.94 1829.96
130-146 + Ox 1845.94 1845.95
137-146 1100.60 1100.61
137 + 146 + Ox 1116.60 1116.60
147-158 1280.72 1280.74
147-171 2746.59 2746.60
159-171 1483.88 1483.88
159-180 2403.32 2403.35
159-186 3090.69 3090.72
172-186 1624.82 1624.83
211-223 1544.82 1544.84
211-223 + Ox 1560.82 1560.82
211-234 2843.61 2843.63
224-234 1316.79 1316.81
224-239 1848.01 1847.98
235-254 + Me-Pyrd 2353.12 2353.14
240-254 + Me-Pyr 1821.90 1821.92
240-254 + Me-Pyr + Ox 1837.90 1837.91

240-254e 1730.86 1730.90
a

Comparison of average calculated peptide masses for up to two missed cleavage sites and two oxidations. Amino acid numbering is assigned to match that of Protein Data Bank entry 1H70.

b

Masses are reported with errors of ± 0.05 Da.

c

Ox stands for addition of +16 Da for one calculated oxidation.

d

Me-Pyr stands for the 2-methyl-pyridine adduct (10) shown in Scheme 3.

e

Peptide mass is taken from a digest done in parallel using an uninhibited DDAH sample.