Table 1.
Comparisons of A/environment/Dongting lake/Hunan/3-9/2007(H10N8) with isolates in GenBank of highest nucleotide and amino acid identity (%)§
| Gene | Site | Nucleotide sequence Isolate with the highest homology | Homology (%) | Site | Amino acid sequence Isolate with the highest homology | Homology (%) |
|---|---|---|---|---|---|---|
| HA | 20-1705 | duck/Mongolia/149/03(H10N5) | 96 | 1-561 | mallard/Bavaria/3/06(H10N7) | 97 |
| duck/Mongolia/149/03(H10N5) | 97 | |||||
| NA | 21-1433 | duck/Spain/539/06(H6N8) | 97 | 1-470 | duck/Spain/539/06(H6N8) | 98 |
| Mallard/65112/03(H3N8) | 97 | Mallard/65112/03(H3N8) | 97 | |||
| PB2 | 28-2307 | mallard/Italy/37/02(H5N3) | 97 | 1-759 | mallard/Italy/3401/05(H5N1) | 99 |
| mallard/Italy/250/02(H7N1) | 97 | mallard/Netherlands/12/00(H7N3) | 99 | |||
| PB1 | 25-2298 | duck/Denmark/65047/04(H5N2) | 98 | 1-757 | turkey/Italy/1325/05(H5N2) | 99 |
| turkey/Italy/3807/04(H7N3) | 97 | mallard/Netherlands/12/00(H7N3) | 99 | |||
| PA | 22-2170 | mallard/Italy/3401/05(H5N1) | 97 | 1-716 | mallard/Italy/3401/05(H5N1) | 99 |
| duck/JiangXi/2374/05(H3N6) | 99 | |||||
| NP | 46-1527 | migratory duck/JiangXi/13487/05(H5N3) | 98 | 1-498 | Tree sparrow/Henan/4/04(H5N1) | 99 |
| duck/Jiang Xi/2374/05(H3N6) | 99 | |||||
| M | 1-1027 | duck/Hokkaido/Vac-2/04(H7N7) | 98 | 1-252 | duck/Korea/S9/03(H3N2)a | 100 |
| duck/Hokkaido/Vac-1/04(H5N1) | 98 | |||||
| NS | 1-890 | mallard/Yanchen/05(H4N6) | 98 | 1-230 | duck/Shantou/7488/04(H9N2)b | 98 |
| duck/Jiangxi/1760/03(H7N7) | 98 | mallard/Ohio/217/98(H6N8)b | 98 |
§Comparisons were performed by using the Blast search tool available from GenBank.
a Amino acid sequence of M1 protein was compared.
b Amino acid sequence of NS1 protein was compared.