Table 1.
CArG-box sequences found in the promoters of ripening-induced genes.
| Site | CArG-box and its flanking sequences (5' to 3')1) | Motif 2) | CArG-box position (bps)3) |
|---|---|---|---|
| ACS2-a4) | AGCTATT-CTAAAAAAAG-TATCACATA5) | Possible | X59139 (1,365 - 1,374) (+) |
| ACS2-b | AAATGCAC-CCTAAATTAG-TCAAATAT5) | Possible | X59139 (2,654 - 2,663) (+) |
| ACS4-a | ATCAAACA-CAAATATAAG-TTTGGAAC5) | Atypical | M88487 (567 - 576) (+) |
| ACS4-b | ATTAAACA-CAATTTTAAG-AAACTTTT5) | Atypical | M88487 (1,201 - 1,210) (+) |
| ACS4-c | TGAAATAT-CTAGTTAAAG-ATATGTAC5) | Atypical | M88487 (1,802 - 1,811) (+) |
| ACO1 | GGTTGAAT-CTATAAAAAG-AAAAATAT | Possible | X58273 (1,285 - 1,294) (+) |
| ETR3-a | GGAGAAAT-CCTATAATAG-GGCAAACA | Intermediate | AY600437 (3,121 - 3,130) (+) |
| GAGAAATC-CTATAATAGG-GCAAACAC | Possible | AY600437 (3,122 - 3,131) (+) | |
| GGCAAACA-CCAAAAATAG-CTTGGAGT | Intermediate | AY600437 (3,139 - 3,148) (+) | |
| ETR3-b | AAATTTCA-CTTAATATGG-ACTAGAGA | Possible | AY600437 (3,745 - 3,754) (+) |
| PG-a | GCACCAAT-CTAATTTAGG-TTGAGCCG | Possible | scaffold01076 (1,534,540 - 1,534,549) (-) |
| PG-b | CTTAAAAT-CTATAAATAG-ACAAACCC | MEF2-like | scaffold01076 (1,533,632 - 1,533,641) (-) |
| TBG4-a | TATATGCT-CTATTTTTGG-ACGGCAGG5) | Possible | scaffold00061 (457,025 - 457,034) (+) |
| TBG4-b | TTTGGGCC-CCATTTAAGG-GATTGGGC5) | SRF-like | scaffold00061 (457,311 - 457,320) (+) |
| EXP1-a | TTATTTTA-CATTTATATG-TTATTATT | Atypical | scaffold00114 (3,118,161 - 3,118,170) (-) |
| EXP1-b | TGATGCTT-CAATTTAAAG-AAAATAAA5) | Atypical | scaffold00114 (3,117,729 - 3,117,738) (-) |
| MAN4 | TTTCTTTT-CCATTTATAG-AAAAACCA5) | Intermediate | scaffold01157 (9,316,653 - 9,316,662) (-) |
| PSY1 | TATGTGTA-CCAAAATTAG-AAAATCAG | Intermediate | scaffold00066 (364,464 - 364,473) (+) |
| CTTGTTGA-CTAAATATAG-AATGCATC | MEF2-like | scaffold00066 (364,504 - 364,513) (+) | |
| INV | TTATGATA-CTTAATATGG-TAATCTTT | Possible | Z12027 (1,634 - 1,643) (+) |
| TTCTCACT-CTATAAATAG-AGTTGTTC | MEF2-like | Z12027 (1,667 - 1,676) (+) | |
| RIN-a | GTTGCACT-CTAAAAAAAG-TTAAAAGG5) | Possible | scaffold00243 (210,835 - 210,844) (-) |
| RIN-b | ACAAAGAA-CCATTAAAAG-GTTAAAAA5) | Intermediate | scaffold00243 (210,262 - 210,271) (-) |
1) CArG-box sequences are underlined.
2) CArG-box sequences in the exhibited strand were grouped into motifs. Groups of the motif sequences are referenced in the text.
3) Scaffolds followed by Arabic numerals indicate that the sequences originate from WGS data. Symbols + and - in parentheses indicate that the CArG boxes displayed are presented in either the exhibited (+) or complementary (-) strands.
4) Site was previously described [6].
5) Sequences were used for in vitro gel retardation assays.