. 2011 Feb 2;12:44. doi: 10.1186/1471-2105-12-44

Table 2.

Performance comparison on BaCelLoc protein dataset

Subcellular Location		Size	Cross validation				Independent test

			MultiLoc-GO	GO-TLM			Size (train/test)	MultiLoc-GO			GO-TLM

			-	SP	SE	MCC		SP	SE	MCC	SP	SE	MCC
*Plant* *(491)*	*Nucleus*	121	-	0.9516	0.9752	0.9514	60/61	0.91	0.90	0.77	1.0000	*0.6500*	*0.7252*
	*Cytoplasm*	58	-	0.9434	0.8772	0.8986	52/6	0.41	0.94	0.38	0.7500	1.0000	0.8590
	*Extracellular*	41	-	0.9762	1.0000	0.9869	35/6	0.83	0.95	0.58	1.0000	*0.6667*	0.8100
	*Mitochondria*	67	-	0.9552	0.9552	0.9482	57/10	0.67	0.96	0.51	*0.6429*	*0.9000*	0.7386
	*Chloroplast*	204	-	0.9951	0.9951	0.9916	158/46	0.77	0.94	0.72	*0.7302*	1.0000	0.7777

	*Overall Accuracy*		83.70%	97.14%			76.00%				81.25%

*Fungi* *(1198)*	*Nucleus*	711	-	0.9641	0.9817	0.9354	589/122	0.63	0.79	0.36	1.0000	*0.7213*	0.7246
	*Cytoplasm*	211	-	0.9880	0.9318	0.9564	181/30	0.54	0.78	0.27	*0.483*9	1.0000	0.6311
	*Extracellular*	88	-	0.9130	0.8957	0.8849	72/16	0.78	0.98	0.60	1.0000	0.9375	0.9653
	*Mitochondria*	188	-	0.9780	0.9570	0.9616	177/11	0.68	0.94	0.62	0.7857	1.0000	0.8786

	*Overall Accuracy*		90.10%	95.90%			60.00%				80.45%

*Animal* *(2597)*	*Nucleus*	1166	-	0.9646	0.9854	0.9551	803/363	0.62	0.93	0.57	0.7965	0.9945	0.7876
	*Cytoplasm*	439	-	0.9402	0.8952	0.9017	302/137	0.72	0.82	0.43	*0.7095*	0.9270	0.7648
	*Extracellular*	804	-	0.9900	0.9900	0.9856	632/172	0.97	0.97	0.89	1.0000	*0.2326*	*0.4406*
	*Mitochondria*	188	-	0.9783	0.9574	0.9653	153/35	0.89	0.97	0.81	0.9714	0.9714	0.9699

	*Overall Accuracy*		85.70%	96.85%			73.00%				79.46%