Table 1.

Summary of Spearman's correlation coefficients between F_ST and ϕ as the discordance in replicabilities for the 37 associations from the Continental Set

ASSOCIATIONS	CATHEGORY	POOLINGa	VARIABLEb	N		P value
Full Set	All SNPs	By Gene	Average FST	33	0.496 *	0.003
			Variance FST	32	0.636 *	7 × 10-5
		Independently	Average FST	3710	0.155 *	2.58 × 10-21
	tagSNPs	By Gene	Average FST	33	0.187	0.313
		Independently	Average FST	538	0.16 *	2.02 × 10-4
Conservative Setc	All SNPs	By Gene	Average FST	26	0.666 *	0.0002
			Variance FST	24	0.666 *	4.5 × 10-6
		Independently	Average FST	2454	0.15 *	0.628
	tagSNPs	By Gene	Average FST	24	0.453	0.280
		Independently	Average FST	486	0.063 *	6.85 × 10-4

^a Pooling by gene tests average genic F_ST, while in pooling independently each SNP has been assigned the replicability from the association it belongs to

^b Variable indicates which parameter (either average or variance in F_ST) has been tested versus ϕ

^c Conservative set contains those associations that have a replicability of ≥50% in at least one continent