Table 2.
Summarized information on sRNAs verified in this study
sRNAs | strand | upstream gene | downstream gene | 5' end | 3' end | size (nt) | No. | prediction |
---|---|---|---|---|---|---|---|---|
sRNA-Xoo1 | + | PXO_02602 | PXO_02603 | 4451914a | 4452016b | 103c; ~100d | 1 | NC-211 |
sRNA-Xoo2 | + | PXO_01687 | PXO_01686 | 3205976b | 3206053b | 78 e ~100d; | 1 | N |
~85d | ||||||||
sRNA-Xoo3 | + | PXO_03614 | PXO_03613 | 250669a | 250761b | 93c; ~80d | 2 | NC-137 |
sRNA-Xoo4 | - | PXO_05774 | PXO_02847 | 4955974a | 4955830b | 145c; ~150d | 99 | N |
sRNA-Xoo5 | + | PXO_00354 | PXO_00353 | 2045785a | 2045908b | 124c;~130d; | 2 | NC-123 |
~100d | ||||||||
sRNA-Xoo6 | - | PXO_03506 | PXO_03507 | 5217958b | 5217771b | 188 e ~250d | 7 | NC-248 |
sRNA-Xoo7 | - | PXO_04745 | PXO_04746 | 1379160a | 1378796b | 365c;~300d | 1 | NC-40 |
sRNA-Xoo8 | + | PXO_04362 | PXO_04361 | 1067954b | 1068276b | 323e;~300d | 6 | NC-87 |
aEnds determined by 5' RACE mapping (5' RACE results are given in Additional file 4)
bEnds determined by cloned sequences.
cSize determined by RACE analysis
dSize observed in Northern blot analysis.
eSize determined by cloned sequences.
No.: number of cloned sequences in our cDNA library