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. 2010 Aug 13;183(1):43–49. doi: 10.1164/rccm.201004-0541OC

TABLE 4.

ECLIPSE/NORWAY COHORT/NETT META-ANALYSIS OF EMPHYSEMA QUANTITATIVE TRAIT WITH CORRECTION FOR BODY MASS INDEX: LOCI WITH META-ANALYSIS P VALUE < 10−5

Closest Gene Risk/Nonrisk Allele Risk Allele Frequency ECLIPSE
Norway
NETT
Meta P Value* Meta β (P Value) Hetero-geneity I2 (%)
SNP Chr Type β P Value β P Value β P Value
rs7905537 10 Intergenic PARD3 A/C 0.75 2.22 4.0 × 10−6 1.14 0.17 1.40 0.10 6.8 × 10−7 1.85 (8.1 × 10−7) 0
rs9292394 5 Intergenic CDH6 T/G 0.78 1.35 6.6 × 10−3 2.96 5.3 × 10−4 2.21 0.02 3.5 × 10−6 1.83 (2.1 × 10−6) 31
rs7911712 10 In noncoding gene AL139119.2 A/G 0.15 1.60 4.4 × 10−3 3.51 6.5 × 10−4 2.11 0.07 5.4 × 10−6 2.05 (5.5 × 10−6) 25
rs224731 10 Intergenic PARD3 A/G 0.71 1.75 1.4 × 10−4 1.50 6.7 × 10−2 1.36 0.10 6.0 × 10−6 1.63 (6.4 × 10−6) 0

Definition of abbreviations: Chr = chromosome; ECLIPSE = Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints; NETT = National Emphysema Treatment Trial; SNP = single-nucleotide polymorphism; β = regression coefficient under an additive genetic model.

*

Based on weighted Z-score method.

Based on fixed-effects meta-regression; I2: I2 index used to assess magnitude of heterogeneity of b among studies.

The SNP is located within a noncoding gene; the transcript of the gene is not translated into a protein and is classified as “processed transcript” in Ensembl.