TABLE 4.
Closest Gene | Risk/Nonrisk Allele | Risk Allele Frequency | ECLIPSE |
Norway |
NETT |
Meta P Value* | Meta β (P Value)† | Hetero-geneity I2 (%) | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP | Chr | Type | β | P Value | β | P Value | β | P Value | ||||||
rs7905537 | 10 | Intergenic | PARD3 | A/C | 0.75 | 2.22 | 4.0 × 10−6 | 1.14 | 0.17 | 1.40 | 0.10 | 6.8 × 10−7 | 1.85 (8.1 × 10−7) | 0 |
rs9292394 | 5 | Intergenic | CDH6 | T/G | 0.78 | 1.35 | 6.6 × 10−3 | 2.96 | 5.3 × 10−4 | 2.21 | 0.02 | 3.5 × 10−6 | 1.83 (2.1 × 10−6) | 31 |
rs7911712 | 10 | In noncoding gene‡ | AL139119.2 | A/G | 0.15 | 1.60 | 4.4 × 10−3 | 3.51 | 6.5 × 10−4 | 2.11 | 0.07 | 5.4 × 10−6 | 2.05 (5.5 × 10−6) | 25 |
rs224731 | 10 | Intergenic | PARD3 | A/G | 0.71 | 1.75 | 1.4 × 10−4 | 1.50 | 6.7 × 10−2 | 1.36 | 0.10 | 6.0 × 10−6 | 1.63 (6.4 × 10−6) | 0 |
Definition of abbreviations: Chr = chromosome; ECLIPSE = Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints; NETT = National Emphysema Treatment Trial; SNP = single-nucleotide polymorphism; β = regression coefficient under an additive genetic model.
Based on weighted Z-score method.
Based on fixed-effects meta-regression; I2: I2 index used to assess magnitude of heterogeneity of b among studies.
The SNP is located within a noncoding gene; the transcript of the gene is not translated into a protein and is classified as “processed transcript” in Ensembl.