Table 4. SNPs with strongest evidence for association under each analysis condition.

SNP	Group	p-value	Chra	Position (bp)	Alleleb	Freq-control	Freq-case	ORc	Genes
rs2075650	CCall	2.95×10−81	19	50087459	A	0.820	0.615	0.35	APOE, APOC1, APOC4 TOMM40, PVRL2
rs2075650	Ethnic stratified	1.18×10−15	19	50087459	A				APOE, APOC1, APOC4 TOMM40, PVRL2
rs2075650	AJ	3.74×10−8	19	50087459	A	0.875	0.639	0.25	APOE, APOC1, APOC4 TOMM40, PVRL2
rs2075650	NW	3.21×10−73	19	50087459	A	0.814	0.608	0.35	APOE, APOC1, APOC4 TOMM40, PVRL2
rs7007878	SE	6.53×10−6	8	29098372	A	0.446	0.755	3.83	KIF13B
rs10489216	APOE ε3ε2+ε2ε2	8.44×10−7	1	166869486	G	0.780	0.5	0.28	DPT, XCL1
rs7814569	APOE ε3ε3	1.18×10−6	8	81252421	A	0.930	0.871	0.51	ZBTB10, TPD52
rs4145454	APOE ε4ε3	1.03×10−6	6	164492026	G	0.706	0.786	1.53
rs201119	APOE ε4ε4	1.52×10−8	10	11089983	A	0.793	0.939	4.02	CUGBP2, PITRM1
rs2673604	APOE stratified	2.60×10−6	8	133480789	A				KCNQ3

^aChromosome.

^bAllele depicted is the allele on the Illumina TOP strand.

^cOdds ratio with respect to allele noted.