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Statistically Significant SNPs Identified in Extrapulmonary Tuberculosis Cases vs. Pulmonary Tuberculosis Controls
| SNP | Rank | P-value | MAF in ETB | MAF in PTB | Odds Ratio | Chromosome | Gene |
|---|---|---|---|---|---|---|---|
| rs340708 | 1 | 0.0008 | 0.4375 | 0.125 | 5.444 | 8 | FAM135B |
| rs1886870 | 2 | 0.0009 | 0.6667 | 0.25 | 6 | 13 | RP11-141M1 |
Empirical P-value cutoff from permutation testing = 0.0009
The p-value reported is the raw value.
MAF = Minor Allele Frequency
ETB = Extrapulmonary tuberculosis
PTB = Pulmonary tuberculosis
