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. 2011 Feb 7;11:37. doi: 10.1186/1471-2148-11-37

Table 1.

Species and DNA sequences examined in this study.

No. Species Voucher 28S rDNA histone H3 ITS rDNA mt COI mt IGR
1 Acanthastrea echinata (XX; Mussidae) S031 HQ203399 HQ203520 HQ203308 EU371658
2 Barabattoia amicorum S047 HQ203400 HQ203521 HQ203309 FJ345412 FJ345480
3 Caulastraea echinulata S041 HQ203401 HQ203522 FJ345414 FJ345496
4 Caulastraea furcata P108 HQ203402 HQ203523 HQ203248 HQ203639
5 Caulastraea tumida G61875 HQ203403 HQ203524 HQ203310 HQ203249 HQ203640
6 Cyphastrea chalcidicum G61902 HQ203404 HQ203525 HQ203311 HQ203250
7 Cyphastrea chalcidicum S103 HQ203405 HQ203526 HQ203312 FJ345415
8 Cyphastrea microphthalma S069 HQ203406 HQ203527 FJ345416
9 Cyphastrea serailia G61889 HQ203407 HQ203528 HQ203313 HQ203251
10 Cyphastrea serailia S024 HQ203408 HQ203529 HQ203314 EU371659
11 Cyphastrea serailia P120 HQ203409 HQ203530 HQ203252
12 Diploastrea heliopora (XV) S048 HQ203410 HQ203531 HQ203315 EU371660
13 Echinopora gemmacea S120 HQ203411 HQ203532 HQ203316 FJ345418 FJ345457
14 Echinopora horrida G61907 HQ203412 HQ203533 HQ203317 HQ203253 HQ203641
15 Echinopora lamellosa S109 HQ203413 HQ203534 HQ203318 FJ345419 FJ345458
16 Echinopora mammiformis G61884 HQ203414 HQ203535 HQ203319 HQ203254 HQ203642
17 Echinopora pacificus S110 HQ203415 HQ203536 HQ203320 FJ345420 FJ345459
18 Favia danae G61885 HQ203416 HQ203537 HQ203321 HQ203643
19 Favia danae S092 HQ203417 HQ203538 EU371663 FJ345476
20 Favia favus G61880 HQ203418 HQ203539 HQ203322 HQ203255 HQ203644
21 Favia favus G61915 HQ203419 HQ203540 HQ203323 HQ203256 HQ203645
22 Favia favus S003 HQ203420 HQ203541 HQ203324 EU371710 FJ345511
23 Favia favus S025 HQ203421 HQ203542 EU371664 FJ345465
24 Favia favus S040 HQ203422 HQ203543 HQ203325 EU371665 FJ345466
25 Favia favus P105 HQ203423 HQ203544 HQ203257 HQ203646
26 Favia fragum (XXI) AF549222 AB117222
27 Favia cf. laxa S013 HQ203424 HQ203545 EU371707 FJ345508
28 Favia cf. laxa S014 HQ203425 HQ203546 HQ203326 EU371708 FJ345509
29 Favia lizardensis G61872 HQ203426 HQ203547 HQ203327 HQ203647
30 Favia lizardensis S072 HQ203427 HQ203548 HQ203328 EU371668 FJ345484
31 Favia lizardensis P136 HQ203428 HQ203549 HQ203648
32 Favia cf. maritima G61912 HQ203429 HQ203550 HQ203329 HQ203258 HQ203649
33 Favia matthaii G61881 HQ203430 HQ203551 HQ203330
34 Favia matthaii G61883 HQ203431 HQ203552 HQ203331 HQ203259 HQ203650
35 Favia matthaii S005 HQ203432 HQ203553 HQ203332 EU371669 FJ345471
36 Favia matthaii S029 HQ203433 HQ203554 HQ203333 EU371671 FJ345473
37 Favia maxima S052 HQ203434 HQ203555 HQ203334 EU371674
38 Favia maxima P142 HQ203435 HQ203556 HQ203260 HQ203651
39 Favia cf. maxima P134 HQ203436 HQ203557 HQ203335 HQ203261 HQ203652
40 Favia pallida G61898 HQ203437 HQ203558 HQ203336 HQ203653
41 Favia pallida S036 HQ203438 HQ203559 HQ203337 EU371675 FJ345482
42 Favia rosaria G61911 HQ203439 HQ203560 HQ203338 HQ203262 HQ203654
43 Favia rotumana S068 HQ203440 HQ203561 HQ203339 FJ345427 FJ345485
44 Favia rotundata G61874 HQ203441 HQ203562 HQ203340 HQ203263
45 Favia rotundata P132 HQ203442 HQ203563
46 Favia speciosa S001 HQ203443 HQ203564 HQ203341 EU371677 FJ345505
47 Favia speciosa S026 HQ203444 HQ203565 EU371680 FJ345506
48 Favia speciosa P103 HQ203445 HQ203566 HQ203342 HQ203264 HQ203655
49 Favia stelligera P141 HQ203446 HQ203567 HQ203343 HQ203265 HQ203656
50 Favia truncatus G61897 HQ203447 HQ203568 HQ203344 HQ203266 HQ203657
51 Favites abdita S002 HQ203448 HQ203569 HQ203345 HQ203267
52 Favites chinensis S084 HQ203449 HQ203570 HQ203346 HQ203268
53 Favites complanata S007 HQ203450 HQ203571 HQ203347 EU371689
54 Favites flexuosa P116 HQ203451 HQ203572 HQ203348 HQ203269
55 Favites halicora S115 HQ203452 HQ203573 HQ203349 HQ203270
56 Favites paraflexuosa S100 HQ203453 HQ203574 HQ203350 EU371694 FJ345521
57 Favites pentagona S086 HQ203454 HQ203575 HQ203351 EU371695
58 Favites pentagona P111 HQ203455 HQ203576 HQ203271
59 Favites russelli G61895 HQ203456 HQ203577 HQ203352 HQ203272 HQ203658
60 Favites stylifera P128 HQ203457 HQ203578 HQ203353 HQ203273 HQ203659
61 Goniastrea aspera S107 HQ203458 HQ203579 HQ203354 FJ345430 FJ345487
62 Goniastrea australensis G61876 HQ203459 HQ203580 HQ203355 HQ203274 HQ203660
63 Goniastrea australensis S088 HQ203460 HQ203581 HQ203356 FJ345431 FJ345490
64 Goniastrea australensis S098 HQ203461 HQ203582 EU371696 FJ345491
65 Goniastrea edwardsi S045 HQ203462 HQ203583 HQ203357 EU371697 FJ345492
66 Goniastrea edwardsi S117 HQ203463 HQ203584 FJ345432 FJ345493
67 Goniastrea favulus G61877 HQ203464 HQ203585 HQ203358 HQ203661
68 Goniastrea favulus S022 HQ203465 HQ203586 EU371698 FJ345494
69 Goniastrea palauensis S021 HQ203466 HQ203587 HQ203359 EU371699 FJ345488
70 Goniastrea pectinata G61879 HQ203467 HQ203588 HQ203360 HQ203662
71 Goniastrea pectinata S043 HQ203468 HQ203589 FJ345434 FJ345489
72 Goniastrea pectinata P110 HQ203469 HQ203590 HQ203663
73 Goniastrea retiformis S083 HQ203470 HQ203591 HQ203361 EU371700 FJ345527
74 Goniastrea retiformis P119 HQ203471 HQ203592 HQ203275 HQ203664
75 Hydnophora exesa (Merulinidae) P127 HQ203472 HQ203593 HQ203362 HQ203276 HQ203665
76 Hydnophora microconos (Merulinidae) P121 HQ203473 HQ203594 HQ203363 HQ203277 HQ203666
77 Hydnophora pilosa (Merulinidae) P138 HQ203474 HQ203595 HQ203364 HQ203278 HQ203667
78 Leptoria irregularis P133 HQ203475 HQ203596 HQ203279 HQ203668
79 Leptoria phrygia S081 HQ203476 HQ203597 HQ203365 EU371705 FJ345529
80 Lobophyllia corymbosa (XIX; Mussidae) AF549237 AB117241
81 Merulina ampliata (Merulinidae) P106 HQ203477 HQ203598 HQ203280 HQ203669
82 Merulina scabricula (Merulinidae) P114 HQ203478 HQ203599 HQ203366 HQ203281 HQ203670
83 Montastraea annularis A622 HQ203479 HQ203600 HQ203367 HQ203282
84 Montastraea cf. annuligera P117 HQ203481 HQ203602 HQ203369 HQ203671
85 Montastraea cavernosa (XVI) A005 HQ203480 HQ203601 HQ203368 HQ203283
86 Montastraea colemani P118 HQ203482 HQ203603 HQ203284
87 Montastraea curta G61882 HQ203483 HQ203604 HQ203370 HQ203285
88 Montastraea curta P122 HQ203484 HQ203605 HQ203286
89 Montastraea magnistellata G61896 HQ203485 HQ203606 HQ203371 HQ203287
90 Montastraea magnistellata P109 HQ203486 HQ203607 HQ203288
91 Montastraea multipunctata P131 HQ203487 HQ203608 HQ203372 HQ203289
92 Montastraea salebrosa P139 HQ203488 HQ203609 HQ203373 HQ203290 HQ203672
93 Montastraea valenciennesi G61904 HQ203489 HQ203610 HQ203291 HQ203673
94 Montastraea valenciennesi S006 HQ203490 HQ203611 HQ203374 EU371713 FJ345514
95 Montastraea valenciennesi S008 HQ203491 HQ203612 EU371714 FJ345515
96 Montastraea valenciennesi P102 HQ203492 HQ203613 HQ203375 HQ203292
97 Moseleya latistellata G61909 HQ203493 HQ203614 HQ203376 HQ203293 HQ203674
98 Mussa angulosa (XXI; Mussidae) AF549236 AB441402 NC_008163
99 Mycedium elephantotus (Pectiniidae) S121 HQ203494 HQ203615 HQ203377 HQ203294 HQ203675
100 Mycedium robokaki (Pectiniidae) S126 HQ203495 HQ203616 HQ203378 HQ203295 HQ203676
101 Oulophyllia bennettae G61873 HQ203496 HQ203617 HQ203296 HQ203677
102 Oulophyllia bennettae S033 HQ203497 HQ203618 HQ203379 FJ345436 FJ345497
103 Oulophyllia aff. bennettae P140 HQ203498 HQ203619 HQ203380 HQ203297
104 Oulophyllia crispa S055 HQ203499 HQ203620 HQ203381 EU371721 FJ345500
105 Pectinia alcicornis (Pectiniidae) P124 HQ203500 HQ203621 HQ203382 HQ203298 HQ203678
106 Pectinia ayleni (Pectiniidae) S122 HQ203501 HQ203622 HQ203383 HQ203299 HQ203679
107 Pectinia lactuca (Pectiniidae) P115 HQ203502 HQ203623 HQ203384 HQ203300 HQ203680
108 Pectinia paeonia (Pectiniidae) P126 HQ203503 HQ203624 HQ203385 HQ203301 HQ203681
109 Platygyra acuta P123 HQ203504 HQ203625 HQ203386 HQ203682
110 Platygyra contorta P112 HQ203505 HQ203626 HQ203387 HQ203683
111 Platygyra daedalea G61878 HQ203506 HQ203627 HQ203684
112 Platygyra daedalea S116 HQ203507 HQ203628 HQ203388 FJ345440 FJ345530
113 Platygyra lamellina G61887 HQ203508 HQ203629 HQ203389 HQ203302 HQ203685
114 Platygyra lamellina S114 HQ203509 HQ203630 FJ345441 FJ345531
115 Platygyra pini G61899 HQ203510 HQ203631 HQ203390 HQ203303 HQ203686
116 Platygyra pini S035 HQ203511 HQ203632 HQ203391 FJ345443 FJ345535
117 Platygyra ryukyuensis P101 HQ203512 HQ203633 HQ203392 HQ203304 HQ203687
118 Platygyra sinensis S118 HQ203513 HQ203634 HQ203393 FJ345442 FJ345534
119 Platygyra sinensis P130 HQ203514 HQ203635 HQ203305 HQ203688
120 Platygyra cf. verweyi S037 HQ203515 HQ203636 HQ203394 EU371722 FJ345532
121 Plesiastrea versipora (XIV) S127 HQ203397 HQ203518 HQ203307 HQ203246
122 Plesiastrea versipora (XIV) P137 HQ203398 HQ203519 HQ203247
123 Scapophyllia cylindrica (Merulinidae) S060 HQ203516 HQ203637 HQ203395 FJ345444 FJ345502
124 Trachyphyllia geoffroyi (Trachyphylliidae) J001 HQ203517 HQ203638 HQ203396 HQ203306 HQ203689

Unless indicated by roman numerals and/or family names in parentheses, all species belong to clade XVII and Faviidae, respectively. Species placed in a molecular phylogenetic context for the first time are in bold. Specimens with voucher numbers starting with 'G' are from Great Barrier Reef (Australia), 'S' from Singapore, 'J' from Japan, 'P' from the Philippines, and 'A' from the Atlantic. GenBank accession numbers are displayed for each molecular marker.