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. Author manuscript; available in PMC: 2011 Feb 21.
Published in final edited form as: J Immunol. 2010 Feb 26;184(7):3822–3829. doi: 10.4049/jimmunol.0902788

Table I.

Primers and synthetic peptides used in this study

Primers
Purpose Name 5′ to 3′ sequence Size (bp)
Full-length
tprK
amplification
and
sequencing
tprK-S1 ACCGGGCATGAATTTTCTTT 1593
tprK-As1 CCATACATCCCTACCAAATCA

tprK-int-As2 CCTACCCGCTGATACACCAC
M13rev2 CAGGAAACAGCTATGAC
M13for2 GTAAAACGACGGCCAG

tprK
fluorescent
fragment
length
analysis3
FAM-V1-S GTGGGCTCAGGTTTCGTTC 187
V1-As CGCATAGACATTCCCCTCAC

FAM-V2-S GGGGCTCACGTTTGATATTG 183
V2-As CCGGTGAGCTCCACTTTAAT

FAM-V3-S GAGCGTACGCGTGAAGATG 166
V3-As TAGCAGCCAGAGCACACAGA

FAM-V4-S CTTTGGGGTCTGTGTGCTCT 112
V4-As AACGATACCCCAACGTCAAC

FAM-V5-S TTGGGGTATCGTTGGTTCTC 173
V5-As CCCAAATCAAGACCCTCAAG

FAM-V6-S AAACCAAGGGGTCTGATCCT 188
V6-As TAGACGATACGAACCCCAGA

FAM-V7-S TGGGTGAGTATGGTTGGGTTA 159
V7-As GCCGAATCTCCACCTTCTCT

Real-time
qPCR
TP0574-S CGTGTGGTATCAACTATGG 313
TP0574-As TCAACCGTGTACTCAGTGC

RT-tprK-S AGTTTGCGTCTAACACCGACTG 410
RT-tprK-S TCGCATGGCCATGTTGAGAAAT

rHPRT-S TGATAGATCCATTCCTATGACTGTAGA 265
rHPRT-As GGGTCCTTTTCACCAGCAG

rIFN-γ-S TTCTTCAGCCTCACTCTCTCC 224
rIFN-γ-As TGTTGTCACTCTCCTCTTTCC

Synthetic peptides
Purpose Name NH2- to COOH- terminus sequence Size (aa)

ELISA ChicC1-V6 VHYKVLKARAQAPAAVPAAADDIYF 25

Immunization ChicC2-V5 ASQASNVFQGVFLTTPMQKDDC4 22
ChicC2-V6 MPVHYKVLKARARAGAAVPAAADDIYFPV 29
1

tprK-S/As primers were used for both full-length ORF amplification and sequencing after cloning.

2

Sequencing primer. M13for and M13rev primers are PCR-II TOPO vector primers flanking the cloning site.

3

All sense primers are 5′-fluoresceine (6-FAM) labeled.

4

The final C residue was added during synthesis to allow conjugation with the KLH carrier.