Table I.
Primers | |||
---|---|---|---|
Purpose | Name | 5′ to 3′ sequence | Size (bp) |
Full-length tprK amplification and sequencing |
tprK-S1 | ACCGGGCATGAATTTTCTTT | 1593 |
tprK-As1 | CCATACATCCCTACCAAATCA | ||
| |||
tprK-int-As2 | CCTACCCGCTGATACACCAC | ||
M13rev2 | CAGGAAACAGCTATGAC | ||
M13for2 | GTAAAACGACGGCCAG | ||
| |||
tprK fluorescent fragment length analysis3 |
FAM-V1-S | GTGGGCTCAGGTTTCGTTC | 187 |
V1-As | CGCATAGACATTCCCCTCAC | ||
| |||
FAM-V2-S | GGGGCTCACGTTTGATATTG | 183 | |
V2-As | CCGGTGAGCTCCACTTTAAT | ||
| |||
FAM-V3-S | GAGCGTACGCGTGAAGATG | 166 | |
V3-As | TAGCAGCCAGAGCACACAGA | ||
| |||
FAM-V4-S | CTTTGGGGTCTGTGTGCTCT | 112 | |
V4-As | AACGATACCCCAACGTCAAC | ||
| |||
FAM-V5-S | TTGGGGTATCGTTGGTTCTC | 173 | |
V5-As | CCCAAATCAAGACCCTCAAG | ||
| |||
FAM-V6-S | AAACCAAGGGGTCTGATCCT | 188 | |
V6-As | TAGACGATACGAACCCCAGA | ||
| |||
FAM-V7-S | TGGGTGAGTATGGTTGGGTTA | 159 | |
V7-As | GCCGAATCTCCACCTTCTCT | ||
| |||
Real-time qPCR |
TP0574-S | CGTGTGGTATCAACTATGG | 313 |
TP0574-As | TCAACCGTGTACTCAGTGC | ||
| |||
RT-tprK-S | AGTTTGCGTCTAACACCGACTG | 410 | |
RT-tprK-S | TCGCATGGCCATGTTGAGAAAT | ||
| |||
rHPRT-S | TGATAGATCCATTCCTATGACTGTAGA | 265 | |
rHPRT-As | GGGTCCTTTTCACCAGCAG | ||
| |||
rIFN-γ-S | TTCTTCAGCCTCACTCTCTCC | 224 | |
rIFN-γ-As | TGTTGTCACTCTCCTCTTTCC | ||
| |||
Synthetic peptides
| |||
Purpose | Name | NH2- to COOH- terminus sequence | Size (aa) |
| |||
ELISA | ChicC1-V6 | VHYKVLKARAQAPAAVPAAADDIYF | 25 |
| |||
Immunization | ChicC2-V5 | ASQASNVFQGVFLTTPMQKDDC4 | 22 |
ChicC2-V6 | MPVHYKVLKARARAGAAVPAAADDIYFPV | 29 |
tprK-S/As primers were used for both full-length ORF amplification and sequencing after cloning.
Sequencing primer. M13for and M13rev primers are PCR-II TOPO vector primers flanking the cloning site.
All sense primers are 5′-fluoresceine (6-FAM) labeled.
The final C residue was added during synthesis to allow conjugation with the KLH carrier.