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. 2011 Jan 24;2011:685015. doi: 10.4061/2011/685015

Table 4.

Plasmids containing the gene encoding Lrp homologa.

Plasmid name Accession no. Source organism Length (nt) G+C content (%)b Identity (%)c Query coverage (%) Subject start Subject end Classificationd MOB familye
1 NC_008688 Paracoccus denitrificans PD1222 653815 67 41 92 252075 251623 −
42 93 464218 464673
36 96 639341 639811
37 85 110140 109724
A NC_009007 Rhodobacter sphaeroides 2.4.1 114045 69 39 93 30241 29789 − MOBF
B NC_007488 Rhodobacter sphaeroides 2.4.1 114178 70 43 96 81861 81385 −
bglu_1p NC_012723 Burkholderia glumae BGR1 133591 61 36 90 124017 123577 −
Megaplasmid NC_008043 Ruegeria sp. TM1040 821788 59 41 84 143820 144233 −
41 91 687257 687706
36 91 734136 733690
Megaplasmid NC_007974 Cupriavidus metallidurans CH34 2580084 64 44 88 1171245 1170814 − MOBV
40 91 1169702 1169256
38 97 1586726 1586250
Megaplasmid NC_006569 Ruegeria pomeroyi DSS-3 491611 63 36 88 356303 355869 − MOBC
Megaplasmid NC_007336 Ralstonia eutropha JMP134 634917 61 35 93 377503 377045 −
p42e NC_007765 Rhizobium etli CFN 42 505334 62 34 71 255037 255384 −
p42f NC_007766 Rhizobium etli CFN 42 642517 61 45 88 436907 437341 −
43 91 406350 405901
41 85 491383 491799
39 95 210634 211098
39 96 199426 199899
pAB510a NC_013855 Azospirillum sp. B510 1455109 68 57 88 274908 275342 −
44 95 979549 980013
32 94 1180335 1179874
pAB510b NC_013856 Azospirillum sp. B510 723779 67 44 84 471830 472243 −
32 94 318139 318600
pAB510c NC_013857 Azospirillum sp. B510 681723 67 45 85 408064 407645 −
34 91 36385 36834
pAB510d NC_013858 Azospirillum sp. B510 628837 68 44 79 472768 472379 −
40 90 323184 322741
37 87 281438 281866
30 85 619027 618623
pAtS4e NC_011981 Agrobacterium vitis S4 631775 57 30 87 460443 460871 − MOBQ
34 74 425247 424888
pBPHY01 NC_010625 Burkholderia phymatum STM815 1904893 62 46 85 1153608 1154027 −
pBPHY02 NC_010627 Burkholderia phymatum STM815 595108 59 41 91 271795 271346 −
pC NC_010997 Rhizobium etli CIAT 652 1091523 61 46 88 617696 618130 − MOBQ
42 90 609059 608619
39 95 417738 418202
42 79 714804 715193
39 93 406570 407025
pCAUL01 NC_010335 Caulobacter sp. K31 233649 67 34 89 182479 182042 − MOBQ
pEST4011 NC_005793 Achromobacter denitrificans 76958 62 58 88 41224 40793 − MOBP
58 88 34233 33802
pGMI1000MP NC_003296 Ralstonia solanacearum GMI1000 2094509 67 43 98 1737958 1738437 −
46 93 822030 821572
pHV4 NC_013966 Haloferax volcanii DS2 635786 62 33 71 401763 401410 Archaea
pIJB1 NC_013666 Burkholderia cepacia 99448 63 58 88 74907 75338 − MOBP
pK2044 NC_006625 Klebsiella pneumoniae NTUH-K2044 224152 50 33 90 194643 195086 −
pLVPK NC_005249 Klebsiella pneumoniae 219385 50 33 90 46236 46679 −
pMLa NC_002679 Mesorhizobium loti MAFF303099 351911 59 32 93 185603 185148 −
30 89 207314 206877
pMLb NC_002682 Mesorhizobium loti MAFF303099 208315 60 37 93 24632 24177 −
pNGR234a NC_000914 Rhizobium sp. NGR234 536165 58 41 70 197189 196845 − MOBQ
30 89 188867 188430
pNGR234b NC_012586 Rhizobium sp. NGR234 2430033 62 46 90 656547 656107 − MOBQ
45 85 667494 667913
43 90 1038020 1038463
44 85 682796 683215
38 96 2400849 2401319
44 79 709104 708715
41 89 28336 28761
33 89 1108900 1109337
36 90 703213 702764
32 77 1112953 1112582
pPNAP04 NC_008760 Polaromonas naphthalenivorans CJ2 143747 59 35 90 142511 142068 −
pR132501 NC_012848 Rhizobium leguminosarum bv. trifolii WSM1325 828924 60 47 88 234905 234471 − MOBQ
44 86 386338 386760
39 93 645542 645087
42 79 147165 146776
pRALTA NC_010529 Cupriavidus taiwanensis 557200 60 38 91 465839 465393 −
pRHL1 NC_008269 Rhodococcus jostii RHA1 1123075 65 36 91 854207 854656 +
33 84 783666 783253
pRL12 NC_008378 Rhizobium leguminosarum bv. viciae 3841 870021 61 46 88 599116 598682 − MOBQ
43 88 658287 658718
39 93 45601 45146
42 79 450080 449691
pRL8 NC_008383 Rhizobium leguminosarum bv. viciae 3841 147463 59 33 87 70763 70344 − MOBQ
pRLG201 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 1266105 60 45 89 917573 917136 − MOBQ
44 85 41998 42417
44 79 473039 472650
40 93 1162146 1161691
40 93 1150939 1150484
32 88 707587 707162
pRSKD131A NC_011962 Rhodobacter sphaeroides KD131 157345 70 42 96 148295 147819 −
pRSKD131B NC_011960 Rhodobacter sphaeroides KD131 103355 70 39 93 98400 97948 −
pRSPA01 NC_009429 Rhodobacter sphaeroides ATCC 17025 877879 68 40 90 31309 30866 −
39 88 659383 658952
pRSPH01 NC_009040 Rhodobacter sphaeroides ATCC 17029 122606 70 39 93 118088 118540 −
pSMED01 NC_009620 Sinorhizobium medicae WSM419 1570951 61 40 77 143180 143557 − MOBQ
34 89 574284 573847
pSMED02 NC_009621 Sinorhizobium medicae WSM419 1245408 60 42 91 556486 556932 − MOBQ
40 91 842324 842758
31 87 22345 21917
pSMED03 NC_009622 Sinorhizobium medicae WSM419 219313 60 46 95 105044 105508 −
pSmeSM11a NC_013545 Sinorhizobium meliloti 144170 60 46 96 70449 70922 − MOBQ
pSymA NC_003037 Sinorhizobium meliloti 1021 1354226 60 43 89 1060699 1060262 − MOBQ
pSymB NC_003078 Sinorhizobium meliloti 1021 1683333 62 38 90 440778 440335 − MOBQ
36 89 29555 29992
pTiS4 NC_011982 Agrobacterium vitis S4 258824 57 42 79 96920 97309 − MOBQ
Unnamed NC_011961 Thermomicrobium roseum DSM 5159 917738 66 30 85 736739 737146 − MOBP

aThis list is the result of a TBLASTN analysis using the amino acid sequence of Lrp as a query under strict conditions (i.e., thresholds of 30% identity and 70% query coverage).

bAverage G+C content of the plasmid.

cReported TBLASTN identity to Lrp.

dPlasmid classification according to its source organism (−, Gram-negative plasmid; +, Gram-positive plasmid).

ePlasmid classification according to its relaxase gene sequence as described by Garcillán-Barcia et al. [16].