Table 5.
Repetitive transposon classification
| Transposon class | Number of elements | Total length | Percentage of sequence |
|---|---|---|---|
| Retroelements | 416 | 51,070 | 0.17% |
| LINE/L1 | 38 | 2,458 | 0.01% |
| LTR | 378 | 48,612 | 0.16% |
| Copia | 183 | 21,750 | 0.07% |
| Gypsy | 195 | 26,862 | 0.09% |
| DNA transposons | 269 | 22,699 | 0.07% |
| hobo-Activator | 20 | 2,022 | 0.01% |
| Tc1-IS630-Pogo | 1 | 46 | 0.00% |
| En-Spm | 180 | 13,395 | 0.04% |
| MuDR-IS905 | 33 | 1,834 | 0.00% |
| Harbinger | 6 | 368 | 0.00% |
| Rolling circle Helitrons | 29 | 5,034 | 0.02% |
Classification and frequency statistics for repetitive elements identified by RepeatMasker. The database used to screen unigenes was built with repeat sequences identified in RepBase as belonging to land plants (Embryophyta).