Table 1. N. limnia assembly statistics for the consensus genome (metagenome and five single cells), single cell coassembly (five single cells), and three individual cell assemblies.
assembly statistic | Consensus | Single cells only | Cell 90507.23 | Cell 90507.21 | Cell 90507.3 |
raw reads | 693,589 | 530,748 | 70,156 | 200,938 | 138,886 |
paired-end reads | 33,725 | 26,953 | 3,018 | 517 | 2,388 |
raw bases | 150,994,537 | 118,796,782 | 17,107,411 | 52,341,561 | 29,999,202 |
assembly bases | 1,769,573 | 1,690,404 | 1,094,113 | 1,039,820 | 1,041,604 |
number of elements | 31 | 136 | 355 | 253 | 348 |
number of scaffolds | 2 | 26 | 68 | 76 | 83 |
scaffold bases | 1,757,035 | 1,366,809 | 852,837 | 892,230 | 834,370 |
scaffold N50 | 1,363,261 | 155,965 | 20,543 | 16,443 | 14,147 |
largest scaffold | 1,363,261 | 263,850 | 70,423 | 49,773 | 41,297 |
contig bases | 1,740,160 | 1,664,128 | 1,090,610 | 1,039,764 | 1,031,668 |
contig N50 | 94,192 | 28,182 | 14,827 | 14,834 | 9,613 |
unscaffolded contigs | 29 | 110 | 287 | 177 | 265 |
largest contig | 230,803 | 135,296 | 70,423 | 49,773 | 27,947 |