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. 2011 Feb 22;6(2):e16626. doi: 10.1371/journal.pone.0016626

Table 1. N. limnia assembly statistics for the consensus genome (metagenome and five single cells), single cell coassembly (five single cells), and three individual cell assemblies.

assembly statistic Consensus Single cells only Cell 90507.23 Cell 90507.21 Cell 90507.3
raw reads 693,589 530,748 70,156 200,938 138,886
paired-end reads 33,725 26,953 3,018 517 2,388
raw bases 150,994,537 118,796,782 17,107,411 52,341,561 29,999,202
assembly bases 1,769,573 1,690,404 1,094,113 1,039,820 1,041,604
number of elements 31 136 355 253 348
number of scaffolds 2 26 68 76 83
scaffold bases 1,757,035 1,366,809 852,837 892,230 834,370
scaffold N50 1,363,261 155,965 20,543 16,443 14,147
largest scaffold 1,363,261 263,850 70,423 49,773 41,297
contig bases 1,740,160 1,664,128 1,090,610 1,039,764 1,031,668
contig N50 94,192 28,182 14,827 14,834 9,613
unscaffolded contigs 29 110 287 177 265
largest contig 230,803 135,296 70,423 49,773 27,947