Table 1.
Pause statistics from simulations of the EBR model
| Experiment (Ref) No. RNAPs | Simulation | Conditions | |
|---|---|---|---|
| Short pauses | |||
| Density (10−3 bp–1) 1 s < td < 30 s | 4 (10) 30 RNAPs | 5.2 ± 0.2∗ | −4 pN and 1 mM NTPs |
| Density (10−3 bp–1) 1 s < td < 25 s | 9 (17) 114 RNAPs | 3.1 ± 0.1∗ | 7.3 pN, 250 μM GTP and 1 mM other NTPs |
| Backtracking distance (bp) 1 s < td < 5 s | <1 (2) 56 RNAPs | 0.54 ± 0.02† | −8.4 pN and 1 mM NTPs |
| Frequency (10−2 s–1) 1 s < td < 25 s | 8 (20) 113 RNAPs | 10 ± 0.2† | −8.4 pN and 1 mM NTPs |
| Long pauses | |||
| Density (10−4 bp–1) td > 20 s | 9.5 ± 2.1 (2) 56 RNAPs | 16 ± 1† | −8.4 pN and 1 mM NTPs |
| Duration (s) td > 20 s | 77 ± 11 (+4–15 s) (2) 56 RNAPs | 196 ± 7† | −8.4 pN and 1 mM NTPs |
| Backtracking distance (bp) td > 20 s | 4.7 ± 0.8 (2) 56 RNAPs | 4.2 ± 0.2† | −8.4 pN and 1 mM NTPs |
Means are quoted with estimates for the standard errors in the means.
200 simulation runs.
300 simulation runs.