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. 2011 Mar 2;100(5):1157–1166. doi: 10.1016/j.bpj.2010.12.3734

Table 1.

Pause statistics from simulations of the EBR model

Experiment (Ref) No. RNAPs Simulation Conditions
Short pauses
Density (10−3 bp–1) 1 s < td < 30 s 4 (10) 30 RNAPs 5.2 ± 0.2 −4 pN and 1 mM NTPs
Density (10−3 bp–1) 1 s < td < 25 s 9 (17) 114 RNAPs 3.1 ± 0.1 7.3 pN, 250 μM GTP and 1 mM other NTPs
Backtracking distance (bp) 1 s < td < 5 s <1 (2) 56 RNAPs 0.54 ± 0.02 −8.4 pN and 1 mM NTPs
Frequency (10−2 s–1) 1 s < td < 25 s 8 (20) 113 RNAPs 10 ± 0.2 −8.4 pN and 1 mM NTPs
Long pauses
Density (10−4 bp–1) td > 20 s 9.5 ± 2.1 (2) 56 RNAPs 16 ± 1 −8.4 pN and 1 mM NTPs
Duration (s) td > 20 s 77 ± 11 (+4–15 s) (2) 56 RNAPs 196 ± 7 −8.4 pN and 1 mM NTPs
Backtracking distance (bp) td > 20 s 4.7 ± 0.8 (2) 56 RNAPs 4.2 ± 0.2 −8.4 pN and 1 mM NTPs

Means are quoted with estimates for the standard errors in the means.

200 simulation runs.

300 simulation runs.