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. 2010 Dec 31;4:123–131. doi: 10.2174/1874285801004010123

Table 2.

Identification Results Obtained by Partial 16S rRNA Gene Sequence Analysis and by Vitek 2 NH Characterization of 25 Strains not Included in the Vitek 2 NH Database

Strains Strain Designationsa, b 16S rRNA Gene Analysis Resultsc Differences Between Max Scoresd NCBI - BLAST Species Interpretation Vitek 2 NH Identification Vitek 2 NH Interpretation
A. hominis NCTC 11529T, SSI: P 578 865 / 852 (A. suis) // 496 13 Probable Low discrimination Correct genus not included
A. hominis SSI: P 575 836 / 816 (A. suis) // 495 20 Confirmed Misidentified Misidentified
A. hominis SSI: P 880 812 / 809 (A. suis et A. equuli) // 477 3 Probable Low discrimination No identification to genus level
M. non-liquefaciens ATCC 19975T 861 / 843 (M. lacunata) // 473 18 Confirmed Low discrimination Correct genus included
M. osloensis ATCC 19976T 746 / 601 (M. canis) // 413 145 Confirmed Low discrimination Correct genus not included
N. animaloris (CDC EF-4a) NCTC 12228T 778 / 765 (N. canis) // 413 13 Probable Misidentified Misidentified
N. animaloris (CDC EF-4a) CCUG 1976 865 / 859 (N. canis) // 413 6 Probable Unidentified Correct
N. animaloris (CDC EF-4a) SSI: P 669 855 / 836 (N. canis) // 455 19 Confirmed Unidentified Correct
N. flavescens ATCC 13120T 654 / 643 (N. flava) // 491 11 Probable Low discrimination Correct genus included
N. mucosa CCUG 26877T 806 (N. pharyngis)/ 791 (N. mucosa) // 499 -15 Possible Misidentified Misidentified
N. mucosa SSI: 10496/78 795 (N. pharyngis)/ 780 (N. mucosa) // 496 -15 Possible Misidentified Misidentified
N. pharyngis SSI: Piot 1268 822 (N. flavescens)/ 802 (N. subflava) // 504 Not givene Misidentified Misidentified Misidentified
N. polysaccharea CCUG 18030T 886 / 883 (N. meningitidis) // 505 3 Possible Low discrimination Correct genus included
N. weaveri SSI: 3667B/1997 802/708 (N. subflava) // 442 94 Confirmed Misidentified Misidentified
N. weaveri SSI: 4194/1998 889/778 (N. meningitidis) // 489 112 Confirmed Misidentified Misidentified
N. weaveri SSI: AB 2363 898/787 (N. meningitidis) // 494 111 Confirmed Low discrimination Correct genus included
N. zoodegmatis (CDC EF-4b) NCTC 12230T 836 / 782 (N. canis) // 476 54 Confirmed Misidentified Misidentified
N. zoodegmatis (CDC EF-4b) SSI: P 1168 834 / 810 (N. dentiae) // 498 24 Confirmed Misidentified Misidentified
N. zoodegmatis (CDC EF-4b) SSI: P 983 868 / 809 (N. canis) // 498 59 Confirmed Misidentified Misidentified
P. canis SSI: P 824 838 / 803 (P. dagmatis) // 501 35 Confirmed Misidentified Misidentified
P. dagmatis SSI: P 1533 857 / 839 (P. stomatis) // 501 18 Confirmed Misidentified Misidentified
P. multocida NCTC 10322T 854 / 776 (P. pneumotropica) // 495 78 Confirmed Misidentified Misidentified
P. multocida SSI: P 1367 892 / 816 (P. pneumotropica) // 497 76 Confirmed Misidentified Misidentified
P. multocida SSI: P 1320 838 / 762 (P. pneumotropica) // 469 76 Confirmed Unidentified Correct
P. stomatis SSI: P 716 796 / 774 (P. pneumotropica) // 455 22 Confirmed Unidentified Correct
a-e

see Table 1a.