. 2011 Feb;49(2):565–573. doi: 10.1128/JCM.01323-10

Table 2.

Probe sequences

H antigen	Sequence
a-1^a	`CCTTCGGCTACATTAAGCACT`
a-2^a	`TCTACAACTGATACTGGTTC`
b	`TGCCTATACGCCAAAAGGTACC`
c	`CTGGCGCAGCTAGCTTGAAAG`
d	`ACTACAAAGAAAGTTAATATTGATAC`
j	`ACTGGCGCCGATAAGGAC`
e,h	`GGCGATTCCTTGTCTGCTACG`
i	`TTGATAAGACGAACGGTGAGGT`
k	`ATGGTTTCCTTAAAGTTGACGTTAATAC`
r	`GGCACACCAACAGGACCAAT`
z10	`AACCAACGAATGCAGTTGAA`
z	`CAATTGGGGCCTCGACTACTA`
z35	`TGCTAAGAGCGGTTACTATAA`
z29	`TGGCGCGCACAAAGCAAC`
z6	`TTACAGACCCAGAAATTGCTG`
y	`AAGCACTACGATGCCTACTGC`
L-comp	`AAAAGGCCAATTAGTTACGAT`
v^c	`AATGCCGACAACCACtGAAAG`
z28	`AACCGCCGCGAAAGTGACA`
EN-comp-1^a	`CACTGTAAGTGGTTATAC`
EN-comp-2^a	`CACTGTAGGTGGTTATACCGATGC`
x^c	`ATATTATTCCACTGTAAGTGtGTTATACC`
z15^c	`CTGTAGGTGtGTTATACCGATGC`
1-comp	`CAATAATGGTACTACACTGGATGTAT`
2^b^,^c	`GTGtGTACGAATGGTACtGGC`
5-1^a	`GTGGTACGACTGGTACGGC`
6	`GTACGCTTGGCACGGCTTCTGTAA`
7	`CGAATGGTGCACCTAGTGTAACAGGTA`
G-comp	`AAGCGACAGTGGGTGATCTGA`
f^c	`CGGtCGAATGTTGATGtCTGCTAC`
m/g,m	`TATTGCCACTGGCGCGAC`
m/m,t	`GTTTATACTTCCGTTGTAAGCGGTC`
p	`TGATATTGCCATTGGCGCTGGCG`
s	`CTGCGGTTAACCTATTCAtAGACGACTA`
t-1	`GCTCCAACTGTTCCTGATAAAGTATACGTA`
z51	`TATTAATTCTGGAGCAGTAACTGATGA`
Z4-comp	`ACCGAGCTGGGCTTAGATAAAT`
z24	`GCTACCGTAGATAATAGTACTGGG`

Antigens that required more than probe to capture all or most alleles.

The probe contains locked nucleic acid nucleotides (shown in bold).

The probe contains an additional thymine nucleotide(s) indicated as a lowercase t, required for improvement of specificity.