Skip to main content
. Author manuscript; available in PMC: 2012 Nov 30.
Published in final edited form as: J Immunol Methods. 2010 Oct 12;374(1-2):43–46. doi: 10.1016/j.jim.2010.09.037

Table 1.

False positive and False negative rates for the binary classification, regression and MLVO in test set. The MLVO has systematically lower FP and FN values. When using the same data as the MLVO in combination with a cutoff to classify, the results are worse than Using an SVM.

BIMAS SVM MLVO SVM +cutoff
Sens. Spec. Sens. Spec. Sens. Spec. Sens. Spec.
A*0101 0.7692 0.8385 0.8462 0.9142 1 0.9736
A*0201 0.8499 0.872 0.7949 0.8298 0.935 0.9116
A*0301 0.6765 0.8744 0.8824 0.8367 1 0.9292 0.792 0.844
A*1101 0.3929 0.9439 0.878 0.8788 0.9767 0.9304 0.781 0.828
A*2402 0.8837 0.7615 0.907 0.8796 0.9821 0.916 0.866 0.932
A*3101 0.5556 0.9197 0.8889 0.8912 1 0.9348 0.782 0.83
A*6801 1 0.8166 0.963 0.8995 1 0.9376 0.903 0.95
B*0702 0.8095 0.9129 0.925 0.8853 0.9048 0.9536
B*0801 0.7297 0.9298 0.8108 0.8454 0.8919 0.954
B*1501 0.9531 0.817 0.8906 0.9176 1 0.9464 0.79 0.84
B*2702 1 0.9109 1 0.939 1 0.9712
B*2705 1 0.6215 0.9922 0.9566 1 0.9634
B*3501 0.902 0.7996 0.902 0.8812 0.9804 0.9568
B*3701 0.92 0.7156 0.84 0.8601 0.96 0.9562
B*3901 1 0.818 0.9726 0.9423 1 0.9672
B*40 1 0.8016 1 0.9304 1 0.963
B*4001 1 0.9028 1 0.9375 1 0.974
B*4403 1 0.8548 0.9048 0.9072 1 0.9536 0.928 0.847
B*5101 0.9697 0.8312 0.9394 0.9154 1 0.9602 0.853 0.871
Cw*0401 0.9273 0.8353 0.9636 0.9489 0.9818 0.9838