Table 5.
Comparison with MassMatrix
| Protein | Known Pattern | Proposed Method | MassMatrix |
|---|---|---|---|
| ST8Sia IV | C142C292, C156C356 | C142C292 [Vs:131;pp:109;pp2:41], C156C356 [Vs:100;pp:97;pp2:6] | C142C292 [V*s:54;pp:15;pp2:13], C156C356 [V*s:77;pp:23;pp2:15] |
| Beta-LG | C82C176, C122C135 | C82C176 [Vs:100;pp:49;pp2:16] | C82C176 [V*s:68;pp:14;pp2:14] |
| FucT VII | C68C76, C211C214, C318C321 | C68C76 [Vs:105;pp:41;pp2:98], C211C214 [Vs:100;pp:13;pp2:20], C318C321 [Vs:100;pp:31;pp2:70] | C68C76 [V*s:12;pp:9;pp2:3], C211C214 [V*s:78;pp:16;pp2:11], C318C321 [V*s:46;pp:28;pp2:16] |
| B1,4-GalT | C134C176, C247C266 | C134C176 [Vs:100;pp:61;pp2:29], C247C266 [Vs:195;pp:88;pp2:177] | C134C176 [V*s:34;pp:9;pp2:7], C247C266 [V*s:31;pp:7;pp2:7] |
| C2GnT-I | C59C413, C100C172, C151C199, C372C381 | C59C413 [Vs:158;pp:237;pp2:61], C151C199 [ Vs:100;pp:93;pp2:15], C372C381 [Vs:100;pp:81;pp2:79] | None |
| Lysozyme | C24C145, C48C133 | C24C145 [Vs:140;pp:65;pp2:88], C48C133 [Vs:100;pp:62;pp2:55] | C48C133 [V*s:135;pp:51;pp2:33] |
| FT III | C81C338, C91C341 | C81C338 [Vs:100;pp:179;pp2:93] | None |
| Aldolase | None | None | None |
| Aspa | None | None | None |
The score (Vs) of each disulfide bond and the confidence scores (pp and pp2 values) are shown in brackets, respectively.