Table 1.
Redundant annotations in biological databases
| Databases | DB version mm/dd/yy | GO versionmm/dd/yy | No. of gene products annotated with GO terms | No. of GO annotations applied to gene products | No. of GO terms used in gene product annotations | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Redundant anntation | Redundant annotation (same evidence code) | Total gene products | Redundant anntation | Redundant annotation (same evidence code) | Total GO annotations | Redundant anntation | Redundant annotation (same evidence code) | Total GO terms | |||
| Ensembla | 09/01/09 | 01/01/10 | 307,467 | 299,911 | 673,180 | 783,687 | 707,335 | 4,395,125 | 2,978 | 2,551 | 12,309 |
| Geneb | 12/15/09 | 01/01/10 | 88,797 | 73,001 | 235,852 | 223,772 | 143,537 | 1,234,220 | 3,369 | 2,632 | 15,363 |
| AspGDc | 12/21/09 | 01/01/10 | 523 | 225 | 3,425 | 640 | 259 | 15,340 | 239 | 107 | 3,259 |
| CGD | 11/24/09 | 01/01/10 | 474 | 229 | 4,040 | 772 | 309 | 20,009 | 254 | 104 | 3,332 |
| dictyBase | 12/27/09 | 01/01/10 | 2,590 | 1,619 | 7,489 | 4,651 | 2,377 | 31,064 | 368 | 241 | 2,403 |
| EcoCyc | 12/14/09 | 01/01/10 | 173 | 155 | 1,869 | 273 | 219 | 4,992 | 132 | 111 | 1,388 |
| FB | 10/30/09 | 01/01/10 | 3,355 | 1,823 | 12,509 | 7,301 | 2,740 | 68,316 | 1,077 | 656 | 4,924 |
| GeneDB_Pfalciparum | 10/27/05 | 01/01/10 | 21 | 16 | 2,206 | 21 | 16 | 4,632 | 17 | 15 | 663 |
| GeneDB_Spombe | 09/28/09 | 01/01/10 | 2,797 | 1,330 | 5,213 | 4,009 | 1,662 | 34,114 | 495 | 297 | 3,394 |
| GeneDB_Tbrucei | 07/18/07 | 01/01/10 | 234 | 191 | 2,977 | 251 | 202 | 10,414 | 61 | 52 | 935 |
| GR_protein | 08/26/09 | 01/01/10 | 426 | 369 | 41,321 | 552 | 445 | 49,721 | 90 | 77 | 646 |
| JCVI_CMR | 07/22/09 | 01/01/10 | 446 | 412 | 21,271 | 455 | 417 | 54,398 | 90 | 83 | 2,350 |
| MGI | 12/17/09 | 01/01/10 | 14,927 | 13,466 | 18,167 | 50,970 | 33,966 | 151,652 | 1,564 | 1,214 | 7,327 |
| NCBI | 03/03/08 | 01/01/10 | 324 | 187 | 11,274 | 457 | 319 | 27,647 | 66 | 63 | 492 |
| PDB | 12/17/09 | 01/01/10 | 10,234 | 10,234 | 21,849 | 18,263 | 18,263 | 83,588 | 283 | 283 | 1,884 |
| PseudoCAP | 06/28/06 | 01/01/10 | 584 | 244 | 1,519 | 720 | 275 | 7,284 | 54 | 30 | 859 |
| RefSeq | 12/14/09 | 01/01/10 | 1,945 | 1,945 | 12,166 | 2,748 | 2,748 | 36,201 | 125 | 125 | 1,440 |
| RGD | 10/02/09 | 01/01/10 | 9,932 | 8,008 | 17,352 | 29,961 | 15,120 | 180,606 | 1,893 | 1,341 | 9,094 |
| SGD | 12/25/09 | 01/01/10 | 5,273 | 4,482 | 6,353 | 23,815 | 11,575 | 76,188 | 1,118 | 766 | 4,222 |
| SGN | 10/23/09 | 01/01/10 | 12 | 9 | 155 | 12 | 9 | 1,253 | 10 | 8 | 653 |
| TAIR | 12/23/09 | 01/01/10 | 8,102 | 6,871 | 51,713 | 10,615 | 8,656 | 149,466 | 646 | 473 | 4,103 |
| TIGR_CMR | 11/14/07 | 01/01/10 | 757 | 731 | 40,653 | 782 | 756 | 101,965 | 95 | 92 | 2,441 |
| UniProt | 12/17/09 | 01/01/10 | 206 | 41 | 1,290 | 381 | 67 | 9,381 | 11 | 9 | 173 |
| UniProtKB/Swiss-Prot | 12/17/09 | 01/01/10 | 384,061 | 380,296 | 419,241 | 1,303,909 | 1,279,924 | 3,416,194 | 1,709 | 1,514 | 11,507 |
| UniProtKB/TrEMBL | 12/17/09 | 01/01/10 | 3,615,614 | 3,615,469 | 5,981,451 | 9,116,513 | 9,115,708 | 28,760,356 | 1,420 | 1,402 | 9,262 |
| WB | 11/26/09 | 01/01/10 | 5,252 | 5,041 | 15,667 | 9,904 | 8,926 | 91,611 | 497 | 381 | 2,738 |
| ZFIN | 12/23/09 | 01/01/10 | 7,047 | 6,856 | 15,074 | 17,683 | 16,454 | 101,152 | 603 | 509 | 3,019 |