Table 5.
DNA and transcriptional variations of putative promoter variations between EA 2018 and ATCC 824
| Gene locus in EA 2018 | Gene locus in ATCC 824 | Gene varition site in 2018 | Gene varition site in 824 | 9 h (Log2Ratio 2018/824) | 13 h (Log2Ratio 2018/824) | 17 h (Log2Ratio 2018/824) | 21 h (Log2Ratio 2018/824) | 24 h (Log2Ratio 2018/824) | 30 h (Log2Ratio 2018/824) | Product Name |
|---|---|---|---|---|---|---|---|---|---|---|
| CEA_G0334 | CA_C0323 | -96(A) | -(97-96)(-) | 3.362504 | 2.662176 | 2.652177 | 3.222052 | 4.952742 | 2.037345 | Sensory transduction histidine kinase |
| CEA_G0390 | CA_C0380 | -135,-131(A,A) | -135,-131(T,T) | -4.23921 | 5.06975 | 5.365591 | 5.142555 | 3.394778 | 2.099342 | Periplasmic amino acid-binding protein |
| CEA_G2504 | CA_C2490 | -(13-12),-53(-,T) | -12,-(54-53)(C,-) | -2.39555 | -3.35613 | -3.80832 | -2.2032 | -2.7562 | -1.10185 | Xre family DNA-binding domain and TPR repeats containing protein |
| CEA_G3701 | CA_C3694 | -43(T) | -43(C) | 4.045439 | 3.430925 | 3.859781 | 3.69948 | 4.131629 | 3.75554 | TPR-repeat-containing protein |
| CEA_P0034 | CA_P0035 | -84(T) | -84(C) | 3.331902 | 5.740285 | 6.007483 | 8.056546 | 6.576379 | 7.664691 | Aldehyde-alcohol dehydrogenase, AdhEII |