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. 2011 Mar;21(3):487–493. doi: 10.1101/gr.113985.110

Table 1.

Contiguous, spaced (110) and subset (11[WS]) seed patterns lead to different sorting order in suffix arrays constructed for a database sequence AAATAACAG

graphic file with name 487tbl1.jpg

In the subset seed pattern, S denotes equivalence of C and G, and W denotes equivalence of A and T. Underscore indicates potential seed hits for f = 2.