Figure 5.

Alignments of reversed sequences after masking repeats with tantan. Alignments between: (A) the C. elegans genome and the reversed P. pacificus genome; (B) the A. thaliana genome and the reversed P. patens genome; (C) vertebrate proteins and reversed plant proteins; (D) the human genome and the reversed opossum genome; (E) the P. falciparum genome and the reversed D. discoideum genome; (F) the P. falciparum genome and the reversed human genome. The colors indicate alignments after: masking both sets of sequences (solid red); masking the first-named set only (dotted magenta); masking the second-named set only (dashed blue); shuffling the letters in each set (dashed brown). The black lines indicate the expected number of alignments for random sequences.