TABLE 1.
Total | Failed reaction |
Samples scored |
Total variants |
1–8dup8 mutations (not in assay) |
Unprobed variants |
Probed variants |
Correct variants scored |
Missed variants |
Total SNPs interrogated |
SNPs assigned correctly |
|
---|---|---|---|---|---|---|---|---|---|---|---|
Toronto | 1040 | 22 | 1005 | 158 | 13 | 0 | 145 | 145 | 0 | 39195 | 39195 |
Barcelona | 46 | 9 | 37 | 25 | 2 | 7a | 16 | 16 | 0 | 1443 | 1443 |
NCI-US | 62 | 1 | 61 | 43 | 3 | 4b | 36 | 33 | 3h | 2379 | 2376 |
NCI-Italy | 12 | 1 | 11 | 5 | 0 | 2c | 3 | 3 | 0 | 429 | 429 |
Genoa | 14 | 2 | 12 | 13 | 0 | 2d | 11 | 11 | 0 | 468 | 468 |
Leiden | 25 | 1 | 24 | 10 | 0 | 2e | 8 | 8 | 0 | 936 | 936 |
Queensland | 150 | 10 | 140 | 35 | 3 | 8f | 24 | 24 | 0 | 5460 | 5460 |
Leeds | 226 | 6 | 220 | 57 | 7 | 0 | 50 | 50 | 0 | 8580 | 8580 |
Boston | 93 | 0 | 93 | 12 | 2 | 3g | 7 | 5 | 2i | 3627 | 3625 |
Validation | 628 | 30 | 598 | 200 | 17 | 28 | 155 | 150 | 5 | 23322 | 23317 |
0.9677 | 0.9997 | ||||||||||
Total | 1668 | 52 | 1603 | 358 | 30 | 28 | 300 | 295 | 5 | 62517 | 62512 |
0.9833 | 0.9999 |
Affected variants:
p.D84Y, p.L65P, p.R87W (4), p.V59G
p.N71S (2), p.R58X (2)
p.L65P (2)
p.R58X (2)
p.G23R (2)
p.L16P (2), p.L32P (2), p.Q50R (2), p.V51F (2)
p.W15X (2), p.A60T
c.241_254del14 (2), c.IVS2+1G>T
p.A148T(2)