Quantification of inflammatory proteins by iMSTIQ. Peptides derived from conditioned media harvested at 1, 2, 4, 8, and 18 h post-treatment of mouse macrophages with LPS were analyzed using iMSTIQ. As a control, peptides were prepared from media harvested from macrophages 18 h following treatment with PBS. Absolute abundance (y axis) of 14 detected peptides in all six samples is plotted as a function of time points (x axis). Data from the control sample (collected at 18-h time point) are shown at the 19-h time point for clarity. A, Plots for the three nonspecific peptides (group 2 in Table I). B, Plots for the eight targeted peptides that display LPS-dependent release. C, Plots for three targeted peptides that do not display LPS-dependent release.