Table 1. Comparison of the expression profiles between the biological replicate samples.

Sample #	Time point (hr)	Seedling leaves		Flag leaves		Comments
		correlation	False Positive Rate (%)	correlation	False Positive Rate (%)
1	8	0.98	0.85	0.98	3.82	Day 1 8:00am, the end of night
2	12	0.99	1.26	0.98	3.05
3	16	0.99	1.18	0.98	2.21
4	20	0.99	0.92	0.98	2.08	Day 1 8:00pm, the start of night
5	24	0.98	0.95	0.96	4.71	Day 2 0:00am
6	28	0.98	1.00	0.96	3.64
7	32	0.98	1.00	0.99	1.62	Day 2 8:00am, the end of night
8	36	0.99	1.20	0.99	1.72
9	40	0.96	4.09	0.99	1.50
10	44	0.99	1.57	0.98	2.55	Day 2 8:00pm, the start of night